VALIDATION LIST NO. 78. Validation of publication of new names and new combinations previously effectively published outside the IJSEM -- International Committee on Systematic 51 (1): 1 -- International Journal of Systematic and Evolutionary Microbiology
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Genomic approaches to typing, taxonomy and evolution of bacterial isolates -- Gurtler and Mayall 51 (1): 3 -- International Journal of Systematic and Evolutionary Microbiology
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Azospirillum doebereinerae sp. nov., a nitrogen-fixing bacterium associated with the C(4)-grass Miscanthus -- Eckert et al. 51 (1): 17 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the partial 16S rDNA sequence and the partial nifD sequence of Azospirillum doebereinerae sp. nov. are AJ238567 and AJ238568, respectively. 01425 # 2001 IUMS
AJ238567 AJ238568
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Determination of the systematic position of the genus Asticcacaulis Poindexter by a polyphasic analysis -- Abraham et al. 51 (1): 27 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : CID, collision-induced dissociation ; FAB-MS, fast atom bombardment-MS ; PG, phosphatidylglycerol. The EMBL accession numbers for the 16S rRNA gene sequences of Asticcacaulis excentricus DSM 4724T and Asticcacaulis biprosthecium DSM 4723T are AJ247194 and AJ247193, respectively. 01335 # 2001 IUMS
AJ247194 AJ247193
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Reclassification of bioindicator strains Bacillus subtilis DSM 675 and Bacillus subtilis DSM 2277 as Bacillus atrophaeus -- Fritze and Pukall 51 (1): 35 -- International Journal of Systematic and Evolutionary Microbiology
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Clostridium hiranonis sp. nov., a human intestinal bacterium with bile acid 7alpha-dehydroxylating activity -- Kitahara et al. 51 (1): 39 -- International Journal of Systematic and Evolutionary Microbiology
The DDBJ accession numbers for the 16S rDNA sequences of Clostridium hiranonis TO-931T and Clostridium hiranonis HD-17 are AB023970 and AB023971, respectively. 01547 # 2001 IUMS
AB023970 AB023971
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Lactobacillus cypricasei sp. nov., isolated from Halloumi cheese -- Lawson et al. 51 (1): 45 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : MRD, maximum recovery diluent. The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 42961T is AJ251560. 01526 # 2001 IUMS
AJ251560
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Re-examining the 16S rDNA sequence of Halomonas salina -- Baumgarte et al. 51 (1): 51 -- International Journal of Systematic and Evolutionary Microbiology
The EBI/EMBL accession numbers for the 16S rDNA sequences of Halomonas salina ATCC 49509T and DSM 5928T are AJ243447 and AJ243448, respectively. 01548 # 2001 IUMS
AJ243447 AJ243448
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Arcanobacterium pluranimalium sp. nov., isolated from porpoise and deer -- Lawson et al. 51 (1): 55 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 42575T is AJ250959. 01449 # 2001 IUMS
AJ250959
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Vibrio cyclotrophicus sp. nov., a polycyclic aromatic hydrocarbon (PAH)-degrading marine bacterium -- Hedlund and Staley 51 (1): 61 -- International Journal of Systematic and Evolutionary Microbiology
U57919 X74724 Z31657 X74689 Y08430 X74727 X74714 X74710 X16895 X99762 U46579 Y13830 X76335 N00014 N00014
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Reclassification of [Pseudomonas] doudoroffii (Baumann et al. 1983) into the genus Oceanomonas gen. nov. as Oceanomonas doudoroffii comb. nov., and description of a phenol-degrading bacterium from estuarine water as Oceanomonas baumannii sp. nov -- Brown et al. 51 (1): 67 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FAME, fatty acid methyl ester ; MSM, minimal salts medium. The GenBank accession number for the 16S rDNA sequence of Oceanomonas baumannii is AF168367. 01336 # 2001 IUMS
AF168367
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Sphingomonas alaskensis sp. nov., a dominant bacterium from a marine oligotrophic environment -- Vancanneyt et al. 51 (1): 73 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FAS, filtered-autoclaved seawater ; FAMEs, fatty acid methyl esters. The EMBL accession numbers for the sequences determined in this work are AF145752 (1280 bp), AF145753 (1416 bp) and AF145754 (1428 bp), respectively. 01387 # 2001 IUMS
AF145752 AF145753 AF145754
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Ornithinimicrobium humiphilum gen. nov., sp. nov., a novel soil actinomycete with L-ornithine in the peptidoglycan -- Groth et al. 51 (1): 81 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rDNA sequence of Ornithinimicrobium humiphilum strain HKI 0124T is AJ277650. 01435 # 2001 IUMS
AJ277650
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A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis -- Young et al. 51 (1): 89 -- International Journal of Systematic and Evolutionary Microbiology
D12786
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Thioflavicoccus mobilis gen. nov., sp. nov., a novel purple sulfur bacterium with bacteriochlorophyll b -- Imhoff and Pfennig 51 (1): 105 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rDNA sequences of strains 8320 and strain 8321T are AJ010125 and AJ010126, respectively. 01506 # 2001 IUMS
AJ010125 AJ010126
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Phylogenetic and DNA--DNA hybridization analyses of Bradyrhizobium species -- Willems et al. 51 (1): 111 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rDNA of Bradyrhizobium liaoningense LMG 18230T is AJ250813. 01432 # 2001 IUMS
AJ250813
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Hyphomicrobium chloromethanicum sp. nov. and Methylobacterium chloromethanicum sp. nov., chloromethane-utilizing bacteria isolated from a polluted environment -- McDonald et al. 51 (1): 119 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequence of strains CM2T and CM4T are AF198623 and AF198624, respectively. 01479 # 2001 IUMS
AF198623 AF198624
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Clostridium hungatei sp. nov., a mesophilic, N(2)-fixing cellulolytic bacterium isolated from soil -- Monserrate et al. 51 (1): 123 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Biological Sciences, Smith College, Northampton, MA 01063, USA. Abbreviation : CMCase, carboxymethylcellulase. The GenBank accession number for the 16S rDNA sequence of strain ADT is AF020429. 01015 # 2001 IUMS
AF020429
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Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater -- Robertson et al. 51 (1): 133 -- International Journal of Systematic and Evolutionary Microbiology
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Carboxydobrachium pacificum gen. nov., sp. nov., a new anaerobic, thermophilic, CO-utilizing marine bacterium from Okinawa Trough -- Sokolova et al. 51 (1): 141 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain JMT is AF174484. 01341 # 2001 IUMS
AF174484
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Actinomyces marimammalium sp. nov., from marine mammals -- Hoyles et al. 51 (1): 151 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : CCUG, Culture Collection of the University of Goteborg. $ The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 41710T is AJ276405. 01587 # 2001 IUMS
AJ276405
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Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants -- Kirchhof et al. 51 (1): 157 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : LINEs, long interspersed elements ; TEM, transmission electron microscopy. The EMBL accession numbers for the 16S rDNA sequences of Herbaspirillum rubrisubalbicans LMG 2286T, Herbaspirillum seropedicae LMG 6513T, Herbaspirillum frisingense sp. nov. 75B, Herbaspirillum frisingense sp. nov. GSF30T and Herbaspirillum frisingense sp. nov. Mb11 are AJ238356, AJ238361, AJ238357, AJ238358 and AJ238359, respectively. 01485 # 2001 IUMS
AJ238356 AJ238361 AJ238357 AJ238358 AJ238359
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Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975(AL) is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895(AL) -- Chun et al. 51 (1): 169 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Arthrobacter siderocapsulatus NCIMB 11286T is AF226713. 01522 # 2001 IUMS
AF226713
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Reclassification of Desulfobacterium phenolicum as Desulfobacula phenolica comb. nov. and description of strain Sax(T) as Desulfotignum balticum gen. nov., sp. nov -- Kuever et al. 51 (1): 171 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FAME, fatty acid methyl ester ; HMN, 2,2,4,4,6,8,8heptamethylnonane. The GenBank accession number for the nearly complete 16S rRNA sequences of strain SaxT (DSM 7044T) is AF233370. 01545 # 2001 IUMS
AF233370
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Phylogenetic position of Bartonella vinsonii subsp. arupensis based on 16S rDNA and gltA gene sequences -- Houpikian et al. 51 (1): 179 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the gltA sequence of B. vinsonii subsp. arupensis is AF214557. 01523 # 2001 IUMS
AF214557
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Genotypic and chemotaxonomic evidence for the reclassification of Pseudomonas woodsii (Smith 1911) Stevens 1925 as Burkholderia andropogonis (Smith 1911) Gillis et al. 1995 -- Coenye et al. 51 (1): 183 -- International Journal of Systematic and Evolutionary Microbiology
X67037 AB021422
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Amycolatopsis sacchari sp. nov., a moderately thermophilic actinomycete isolated from vegetable matter -- Goodfellow et al. 51 (1): 187 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain K24T (l DSM 44468T l KCTC 9863T) is AF223354. 01538 # 2001 IUMS
AF223354
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Phylogeny of the filamentous bacterium 'Nostocoida limicola' III from activated sludge -- Liu et al. 51 (1): 195 -- International Journal of Systematic and Evolutionary Microbiology
Table 1. Site and date of isolation of ` Nostocoida limicola ' III strains and their accession numbers Isolate Ben 200 Ben 222 Ben 223 Ben 224 Ben 225 196 Site of isolation Tongala (dairy waste), Victoria, Australia Bendigo (domestic), Victoria, Australia Hunter Valley (domestic), New South Wales, Australia Gibson Island (domestic), Queensland, Australia Nambour (dairy waste), Queensland, Australia Date of isolation 7\1997 11\1997 2\1998 8\1998 10\1998 GenBank no. AF244748 AF244749 AF244750 AF244751 AF244752
AF244748 AF244749 AF244750 AF244751 AF244752
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Molecular evolution of the Chlamydiaceae -- Bush and Everett 51 (1): 203 -- International Journal of Systematic and Evolutionary Microbiology
This paper is dedicated to the late Jan Ursing, Associate Editor of IJSB, who was extraordinarily helpful with our paper on reclassification of Chlamydiales. Abbreviations : INDELs, insertions and deletions ; LGT, lateral gene transfer ; ML, maximum-likelihood ; MOMP, major outer-membrane protein ; MP, maximum-parsimony ; NJ, neighbour-joining ; QP, quartet puzzling. The GenBank accession numbers for the scanned and new data produced in this study are AF269256AF269282 and AF240773. 01606 # 2001 IUMS
AF269256 AF269257 AF269258 AF269259 AF269260 AF269261 AF269262 AF269263 AF269264 AF269265 AF269266 AF269267 AF269268 AF269269 AF269270 AF269271 AF269272 AF269273 AF269274 AF269275 AF269276 AF269277 AF269278 AF269279 AF269280 AF269281 AF269282 AF269256 AF269282 AF240773
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Taxonomic studies on the genus Cystofilobasidium: description of Cystofilobasidium ferigula sp. nov. and clarification of the status of Cystofilobasidium lari-marini -- Sampaio et al. 51 (1): 221 -- International Journal of Systematic and Evolutionary Microbiology
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Abbreviation : ITS, internal transcribed spacer. The GenBank accession number for the 18S rDNA sequence of strain CH 2.141T is AF229176, and the accession numbers for the ITS region sequences (including 5n8S rDNA) of strains JCM 5354T, JCM 1545T and CH 2.141T are AB030344, AB030352 and AB030353, respectively. 01536 # 2001 IUMS
AF229176 AB030344 AB030352 AB030353
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Phylogenetic structure of the Sporopachydermia cereana species complex -- Lachance et al. 51 (1): 237 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : CTAB, cetyldimethylethylammonium bromide ; ITS, internal transcribed spacer. The GenBank accession numbers for the sequences reported in this paper are AF202900AF202921. 01426 # 2001 IUMS
AF202900 AF202901 AF202902 AF202903 AF202904 AF202905 AF202906 AF202907 AF202908 AF202909 AF202910 AF202911 AF202912 AF202913 AF202914 AF202915 AF202916 AF202917 AF202918 AF202919 AF202920 AF202921 AF202900 AF202921
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Radical changes to chlamydial taxonomy are not necessary just yet (Letter) -- Schachter et al. 51 (1): 249 -- International Journal of Systematic and Evolutionary Microbiology
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Radical changes to chlamydial taxonomy are not necessary just yet -- reply (Letter) -- Everett and Andersen 51 (1): 251 -- International Journal of Systematic and Evolutionary Microbiology
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A taxonomic note on the authorship and date of valid publication of Rhodococcus sputi -- Tindall and Euzeby 51 (1): 255 -- International Journal of Systematic and Evolutionary Microbiology
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International Committee on Systematic Bacteriology. Minutes of the meetings, 26 and 29 August 1996, Budapest, Hungary -- Biavati 51 (1): 257 -- International Journal of Systematic and Evolutionary Microbiology
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International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 22 and 23 September 1999, Veldhoven, The Netherlands -- Klein 51 (1): 259 -- International Journal of Systematic and Evolutionary Microbiology
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VALIDATION LIST NO. 79. Validation of publication of new names and new combinations previously effectively published outside the IJSEM -- International Committee on Systematic 51 (2): 263 -- International Journal of Systematic and Evolutionary Microbiology
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NOTIFICATION LIST. Notification that new names and new combinations have appeared in volume 50, part 6, of the IJSEM -- International Committee on Systematic 51 (2): 267 -- International Journal of Systematic and Evolutionary Microbiology
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NOTIFICATION LIST. Notification that new names and new combinations have appeared in volume 51, part 1, of the IJSEM -- International Committee on Systematic 51 (2): 269 -- International Journal of Systematic and Evolutionary Microbiology
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Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients -- Coenye et al. 51 (2): 271 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : AFLP, amplified fragment length polymorphism ; CF, cystic fibrosis. The GenBank accession numbers for the 16S rRNA gene sequences of LMG 18941, LMG 13010T and LMG 16656 are AF175314, AF148555 and AF148556, respectively. 01380 # 2001 IUMS
AF175314 AF148555 AF148556
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Proposal of Sphingomonas wittichii sp. nov. for strain RW1(T), known as a dibenzo-p-dioxin metabolizer -- Yabuuchi et al. 51 (2): 281 -- International Journal of Systematic and Evolutionary Microbiology
Fig. 4. Phylogenetic position of Sphingomonas sp. strain RW1T among Sphingomonas and Zymomonas species obtained by the neighbour-joining analysis of 16S rDNA. Figures in parentheses indicate the accession numbers of 16S rDNA sequence data. Bar, 10 nucleotide substitutions per 1000 nucleotides of 16S rDNA sequence. Bootstrap values from 1000 analyses are shown at the branch points.
D16145 X87161 U20756 U20773 D16147 U20775 X94103 D13945 D13723 D13727 D13737 Y10677 Y13774 D16144 X72721 D13726 D16146 X97776 Y09638 Y09637 Y09639 X87274 AB021492 AB021370
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Characterization of two novel saccharolytic, anaerobic thermophiles, Thermoanaerobacterium polysaccharolyticum sp. nov. and Thermoanaerobacterium zeae sp. nov., and emendation of the genus Thermoanaerobacterium -- Cann et al. 51 (2): 293 -- International Journal of Systematic and Evolutionary Microbiology
Present address : New England Biolabs Inc., 32 Tozer Road, Beverly, MA 019155510, USA. Present address : Department of Agricultural Engineering, University of Illinois at UrbanaChampaign, Urbana, IL 61801, USA. The GenBank accession numbers for the 16S rDNA sequence of strains KMTHCJT and mel2T are U40229 and U75993, respectively. 01442 # 2001 IUMS
U40229 U75993
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Pyrobaculum oguniense sp. nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 degrees C -- Sako et al. 51 (2): 303 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DAPI, 4h,6h-diamidino-2-phenylindole dihydrochloride ; ITS, internal transcriptional spacer ; RDP, Ribosomal Database Project ; Slayer, surface layer. The DDBJ accession number for the 16S rDNA sequence of strain TE7T is AB029339. 01417 # 2001 IUMS
AB029339
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Phylogenetic relationships of Xylella fastidiosa strains from different hosts, based on 16S rDNA and 16S--23S intergenic spacer sequences -- Mehta and Rosato 51 (2): 311 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : CLS, coffee leaf scorch ; CVC, citrus variegated chlorosis ; PLS, plum leaf scald ; RAPD, random amplified polymorphic DNA. The GenBank accession numbers for the 16S rDNA and 16S23S intergenic spacer sequences of Xylella fastidiosa strains described in this work are AF203388AF203397 and AF237650AF237651. 01569 # 2001 IUMS
AF203388 AF203389 AF203390 AF203391 AF203392 AF203393 AF203394 AF203395 AF203396 AF203397 AF237650 AF237651 AF203388 AF203397 AF237650 AF237651
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Saccharopolyspora flava sp. nov. and Saccharopolyspora thermophila sp. nov., novel actinomycetes from soil -- Lu et al. 51 (2): 319 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Biology, HeBei University, Baoding 071002, People's Republic of China. The GenBank accession numbers for the 16S rDNA sequences of strains 07T (l AS4.1520T) and 216T (l AS4.1511T) are AF154128 and AF127526, respectively. 01453 # 2001 IUMS
AF154128 AF127526
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Dethiosulfovibrio russensis sp. nov., Dethiosulfovibrio marinus sp. nov. and Dethiosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments -- Surkov et al. 51 (2): 327 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequences of D. russensis strains SR12T and SR13, D. marinus WS100T and D. acidaminovorans SR15T are AF234542, AF234543, AF234544 and AY005466, respectively. 01556 # 2001 IUMS
AF234542 AF234543 AF234544 AY005466
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Rickettsia felis: molecular characterization of a new member of the spotted fever group -- Bouyer et al. 51 (2): 339 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : CS, citrate synthase ; SFG, spotted fever group ; TG, typhus group. The GenBank accession numbers for the 17 kDa protein gene and rompA sequences of Rickettsia felis are AF195118 and AF191026, respectively. 01601 # 2001 IUMS
AF195118 AF191026
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Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawater -- Yumoto et al. 51 (2): 349 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession number for the 16S rRNA sequence of AL15-21T is AB030583. 01511 # 2001 IUMS
AB030583
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Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae -- Cui et al. 51 (2): 357 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DAP, diaminopimelic acid, GL, phospholipids of unknown structure containing glucosamine ; ISP, International Streptomyces Project ; PC, phosphatidylcholine ; PE, phosphatidylethanolamine ; PG, phosphatidylglycerol ; PI, phosphatidylinositol ; PME, phosphatidylmethylethanolamine. The GenBank accession number for the 16S rDNA sequence of Streptimonospora salina strain YIM 90002T (l CC TCC 99003T l CCRC 16284T) is AF178988. 01363 # 2001 IUMS
AF178988
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Desulfomonile limimaris sp. nov., an anaerobic dehalogenating bacterium from marine sediments -- Sun et al. 51 (2): 365 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : 3CB, 3-chlorobenzoate. The GenBank accession numbers for the 16S rDNA sequences of Desulfomonile limimaris strains DCB-MT and DCB-F are AF230531 and AF282177. 01529 # 2001 IUMS
AF230531 AF282177
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Clarification of the relationship between the members of the family Thermomonosporaceae on the basis of 16S rDNA, 16S--23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses -- Zhang et al. 51 (2): 373 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DPG, diphosphatidylglycerol ; ITS, internal transcribed spacer ; PE, phosphatidylethanolamine ; PI, phosphatidylinositol ; PIM, phosphatidylinositol mannoside. The GenBank accession numbers for the 16S rDNA, 16S23S rDNA ITS and 23S rDNA sequences of members of the family Thermomonosporaceae are given in Table 1. 01521 # 2001 IUMS
AF134109 AF134089 AF134090 AF134091 AF134092 AF134094 AF134093 AF134095 AF163125 AF134096 AF134097 AF134098 AF163126 AF134099 AF134100 AF163127 AF163128 AF134101 AF134102 AF134103 AF163129 AF163130 AF134104 AF134105 AF163131 AF163132 AF134106 AF134107 AF134108 AF163133 AF134110 AF134111 AF163134 AF163135 AF134112 AF134086 AF134071 AF134072 AF134066 AF134067 AF163114 AF134073 AF134074 AF134075 AF163136 AF134076 AF134077 AF163137 AF134078 AF163138 AF163139 AF134079 AF134080 AF163140 AF163141 AF134081 AF134082 AF163142 AF163143 AF134083 AF134084 AF134085 AF163144 AF134087 AF134088 AF163145 AF163146 AF134068 AF163115 AF163116 AF163117 AF163118 AF163119 AF134069 AF163120 AF163121 AF134070 AF163122 AF163123 AF163124 AL079345
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A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data -- Dalevi et al. 51 (2): 385 -- International Journal of Systematic and Evolutionary Microbiology
for this study are available through the public databases, under the accession numbers listed in Table 1. Three environmental clone sequences (SBR1039, CH21 and GC55) were determined in this study using methods described previously (Burrell et al., 1998). Sequences were aligned in the ARB database (Ludwig & Strunk, 1997) and exported using the Lane mask as a filter (Lane, 1991). Datasets contained between 20 and 25 sequences comprising an ingroup (the taxa of primary interest) and five sets of division-level outgroup sequences selected from a total of 11 outgroup divisions (Table 1). Each outgroup division comprised three taxa representing the known phylogenetic breadth of that division to avoid long unbroken branches to outgroups. Of the 40 or so bacterial divisions that have been recognized (Hugenholtz et al., 1998b), 11 were selected for use as possible outgroups for this study (Table 1). They included well-characterized divisions with many cultivated representatives, such as the Proteobacteria and the Actinobacteria, and recently described divisions such as the Acidobacteria and the Verrucomicrobia. Divisions with long branch lengths (e.g. Planctomycetes and OP11) or questionable monophyly (e.g. the low-GjC Gram-positives ; Ludwig & Schleifer, 1999) were not used as outgroups. Most 16S rDNA sequences used were almost full length ( 1400 nt), and shorter sequences were selected only occasionally when the lack of full-length sequences necessitated their inclusion.
X84482 M11223 M34132 J01695 M15923 U75602 X95744 X90515 L09663 C09672 M21413 M21774 M59176 L10659 X60514 X67145 U75647 D26171 X77215 X77140 L11703 M59051 M83548 D16296 X82559 X86776 X71836 M34115 M34116 AF027092 AF027089 AF027082 AF027086 AB011342 AJ271047 AJ271048 AF029043 AF029050 AB015269 AB015271 AF027005 AF050559 AF027004 AF027098 AF050564
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Enterococcus villorum sp. nov., an enteroadherent bacterium associated with diarrhoea in piglets -- Vancanneyt et al. 51 (2): 393 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Laboratory of Microbiology, AZ St.-Jan AV, Brugge, Belgium. Present address : Yakult Belgium sa/nv, Brussels, Belgium. The EMBL accession number for the 16S rDNA sequence of Enterococcus villorum LMG 12287T is AJ271329. 01515 # 2001 IUMS
AJ271329
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Schineria larvae gen. nov., sp. nov., isolated from the 1st and 2nd larval stages of Wohlfahrtia magnifica (Diptera: Sarcophagidae) -- Toth et al. 51 (2): 401 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Research Institute for Soil Science and Agricultural Chemistry, Budapest, Hungary. Abbreviations : DPG, diphosphatidylglycerol ; PE, phosphatidylethanolamine ; PG, phosphatidylglycerol ; PS, phosphatidylserine ; TEM, transmission electron microscopy. The GenBank accession numbers for the 16S rDNA sequence of strains L1/68T, L1/57, L1/58 and L2/11 are AJ252143, AJ252144, AJ252145 and AJ252146, respectively. 01530 # 2001 IUMS
AJ252143 AJ252144 AJ252145 AJ252146
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Mycoplasma microti sp. nov., isolated from the respiratory tract of prairie voles (Microtus ochrogaster) -- Brown et al. 51 (2): 409 -- International Journal of Systematic and Evolutionary Microbiology
Present address : 16 400 Black Rock Road, Germantown, MD 20874, USA. Abbreviation : CCU, colour changing units. The GenBank accession number for the 16S rRNA gene sequence of strain IL371T is AF212859. 01632 # 2001 IUMS
AF212859
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Mycoplasma agassizii sp. nov., isolated from the upper respiratory tract of the desert tortoise (Gopherus agassizii) and the gopher tortoise (Gopherus polyphemus) -- Brown et al. 51 (2): 413 -- International Journal of Systematic and Evolutionary Microbiology
Present address : 16400 Black Rock Road, Germantown, MD 20874, USA. Abbreviation : URTD, upper respiratory tract disease. The GenBank accession number for the 16S rRNA gene sequence of Mycoplasma agassizii is U09786. 01633 # 2001 IUMS
U09786
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Mycoplasma alligatoris sp. nov., from American alligators -- Brown et al. 51 (2): 419 -- International Journal of Systematic and Evolutionary Microbiology
Present address : 59 Bishop Lane, Groton, CT 06340, USA. Present address : National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA. § Present address : Wildlife Conservation Society, 2300 Southern Boulevard, Bronx, NY 104601099, USA. ¶ Present address : 16400 Black Rock Rd, Germantown, MD 20874, USA. The GenBank accession number for the 16S rRNA gene sequence of strain A21JP2T is U56733. 01634 # 2001 IUMS
U56733
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Filobacillus milensis gen. nov., sp. nov., a new halophilic spore-forming bacterium with Orn-D-Glu-type peptidoglycan -- Schlesner et al. 51 (2): 425 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequences of SH 714T and Bacillus haloalkaliphilus are AJ23842 and AJ23841, respectively. 01484 # 2001 IUMS
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Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans -- Nazina et al. 51 (2): 433 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rDNA sequences of strains UT, X, 34T, K and Sam are AF276304AF276308. 01528 # 2001 IUMS
AF276304 AF276305 AF276306 AF276307 AF276308 AF276304 AF276308
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Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov -- Fortina et al. 51 (2): 447 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Ureibacillus terrenus is AJ276403. 01590 # 2001 IUMS
AJ276403
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Anaerobranca gottschalkii sp. nov., a novel thermoalkaliphilic bacterium that grows anaerobically at high pH and temperature -- Prowe and Antranikian 51 (2): 457 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Biotex, Center for Biotechnology of Extremophiles, Nartenstrasse 4A, D-21079 Hamburg, Germany. The GenBank accession number for the complete 16S rDNA sequence of strain LBS3T is AF203703. 01598 # 2001 IUMS
AF203703
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Actinopolymorpha singaporensis gen. nov., sp. nov., a novel actinomycete from the tropical rainforest of Singapore -- Wang et al. 51 (2): 467 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DAP, diaminopimelic acid ; TSB, tryptic soy broth. The GenBank accession number for the 16S rDNA sequence of strain IM 7744T is AF237815. 01561 # 2001 IUMS
AF237815
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Aerococcus sanguicola sp. nov., isolated from a human clinical source -- Lawson et al. 51 (2): 475 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 43001T is AJ276512. 01628 # 2001 IUMS
AJ276512
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Hydrogenophilus hirschii sp. nov., a novel thermophilic hydrogen-oxidizing beta-proteobacterium isolated from Yellowstone National Park -- Stohr et al. 51 (2): 481 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Institut fur Meereskunde, Dusternbrooker Weg 20, $ $ 24105 Kiel, Germany. Present address : Biologische Bundesanstalt fur Land- und Forstwirt$ schaft, Institut fur Pflanzenvirologie, Mikrobiologie und biologische $ Sicherheit, 38104 Braunschweig, Germany. Abbreviation : TTC, triphenyltetrazolium chloride. The GenBank/EMBL /DDBJ accession numbers for the 16S rRNA gene sequences of Yel5aT and Mar3 are AJ131694 and AJ277439, respectively. 01458 # 2001 IUMS
AJ131694 AJ277439
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Methanobacterium congolense sp. nov., from a methanogenic fermentation of cassava peel -- Cuzin et al. 51 (2): 489 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA sequence of strain CT is AF233586. 01562 # 2001 IUMS
AF233586
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Marinitoga camini gen. nov., sp. nov., a rod-shaped bacterium belonging to the order Thermotogales, isolated from a deep-sea hydrothermal vent -- Wery et al. 51 (2): 495 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Biology and Biochemistry, University of Bath, South Building, Claverton Down, Bath BA2 7AY, UK. ! Present address : Institut des Sciences et Techniques de l'Ingenieur d'Angers 62, avenue Notre Dame du Lac, 49000 Angers, France. The EMBL accession number for the 16S rRNA sequence of strain MV1075T is AJ250439. 01570 # 2001 IUMS
AJ250439
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rRNA sequences reflect the ecophysiology and define the toxic cyanobacteria of the genus Nodularia -- Moffitt et al. 51 (2): 505 -- International Journal of Systematic and Evolutionary Microbiology
X59559 AF268012 AF268016 AF268015 AF268013 AF268009 AF268008 AF268010 AF268014 AF268011 AF268007 AF268017 AF268006 AF268004 AF268005 AF268024 AF268023 AF268019 AF268022 AF268021 AF268020 AF268018 AJ224447
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Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera -- Lyra et al. 51 (2): 513 -- International Journal of Systematic and Evolutionary Microbiology
! Present address : Laboratoire de Cryptogamie, Museum National d 'Histoire Naturelle, 12 rue Buffon, 75005 Paris, France. ! Present address : Universite de Rennes 1, UMR 6553 Ecobio, Campus de Beaulieu, Bat 14, Avenue du General Leclerc, 35042 Rennes Cedex, France. Abbreviations : ERIC, enterobacterial repetitive intergenic consensus ; LTRR, long tandemly repeated sequence ; ML, maximum-likelihood ; MP, maximum-parsimony ; NJ, neighbour-joining ; REP, repetitive extragenic palindromic ; STRR, short tandemly repeated sequence ; UPGMA, unweighted pairs group method with averages. The GenBank/EMBL accession numbers for the cyanobacterial 16S rRNA gene sequences are AJ133151AJ133154, AJ133156, AJ133157, AJ133159 AJ133170, AJ133172AJ133176 and AJ133185 01586 # 2001 IUMS
AJ133151 AJ133152 AJ133153 AJ133154 AJ133172 AJ133173 AJ133174 AJ133175 AJ133176 AJ133151 AJ133154 AJ133156 AJ133157 AJ133159 AJ133170 AJ133172 AJ133176 AJ133185
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Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position -- Achenbach et al. 51 (2): 527 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : ClRB, (per)chlorate-reducing isolate(s) ; MCL, maximum concentration limit. The GenBank accession numbers for the 16S rRNA sequences are listed in Methods. 01614 # 2001 IUMS
M88726 Y10109 Z29617 M11224 X72724 Y17060 D16209 M34132 X77679 L33689 X68491 L15531 X74913 L01575 U26415 M26636 M88157 AF170352 AF170353 AF288771 AF288772 AF288773 AF047462 AF170354 AF170355 AF288774 AF288775 AF170357 AF288776 AF170356 AF170348 AF170349 AF170350 AF170351 AF170359 AF170358 AF288777
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Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland -- Elo et al. 51 (2): 535 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rDNA sequences of strains KM8, KK19T, KK20, KN24, KN25, HM26 and HM31 are AJ011321AJ011327, respectively. 01500 # 2001 IUMS
AJ011321 AJ011322 AJ011323 AJ011324 AJ011325 AJ011326 AJ011327 AJ011321 AJ011327
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Classification of Ralstonia pickettii biovar 3/'thomasii' strains (Pickett 1994) and of new isolates related to nosocomial recurrent meningitis as Ralstonia mannitolytica sp. nov -- De Baere et al. 51 (2): 547 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : TSA, tryptic soy agar. The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA sequences reported in this paper are AJ270252AJ270266 and AJ271437. 01594 # 2001 IUMS
AJ270252 AJ270253 AJ270254 AJ270255 AJ270256 AJ270257 AJ270258 AJ270259 AJ270260 AJ270261 AJ270262 AJ270263 AJ270264 AJ270265 AJ270266 AJ270252 AJ270266 AJ271437
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Asaia siamensis sp. nov., an acetic acid bacterium in the alpha-Proteobacteria -- Katsura et al. 51 (2): 559 -- International Journal of Systematic and Evolutionary Microbiology
Present address : 2-3-21 Seinancho, Fujieda, Shizuoka 426-0063, Japan. The DDBJ accession numbers for the 16S rRNA gene sequences of isolates S60-1T and Y85 are AB035416 and AB025932, respectively. 01495 # 2001 IUMS
AB035416 AB025932
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Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp. nov. and Thioalkalivibrio denitrificans sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic sulfur-oxidizing bacteria from soda lakes -- Sorokin et al. 51 (2): 565 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL accession numbers for the 16S rDNA sequences of strains ALJDT, AL 2T, ALJ 12T, AL 3T and AL 7T are AF126545AF126549, respectively. 01580 # 2001 IUMS
AF126545 AF126546 AF126547 AF126548 AF126549 AF126545 AF126549
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Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers -- Coates et al. 51 (2): 581 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA sequences described in this work are AF335182 (strain TACP-2T), AF335183 (strain TACP-5), U28173 (strain H-2T) and U41561 (strain 172T). 01613 # 2001 IUMS
U28173 U41561 AF335182 AF335183
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Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov -- Song et al. 51 (2): 589 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Geosciences, Princeton University, NJ 08544-1003, USA. The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA sequences described in this work are AF229857 (strain 2FB2), AF229862 (strain 2FB6), AF229874 (strain 4FB10), AF229867 (strain 4FB1), AF229868 (strain 4FB2), AF229881 (strain 3CB2), AF229882 (strain 3CB3) and AF229887 (strain 3BB1). 01615 # 2001 IUMS
AF229857 AF229862 AF229874 AF229867 AF229868 AF229881 AF229882 AF229887
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Sphingomonas cloacae sp. nov., a nonylphenol-degrading bacterium isolated from wastewater of a sewage-treatment plant in Tokyo -- Fujii et al. 51 (2): 603 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : NP, nonylphenol. The GenBank/DDBJ accession number for the 16S rDNA sequence of strain S-3T is AB040739. 01641 # 2001 IUMS
AB040739
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Methylosarcina fibrata gen. nov., sp. nov. and Methylosarcina quisquiliarum sp. nov., novel type I methanotrophs -- Wise et al. 51 (2): 611 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Plant Genome Mapping Laboratory, 162 Riverbend Research Building, University of Georgia, Athens, GA 30602, USA. The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA and partial pmoA sequence of AML-C10T and AML-D4T are AF177296 and AF177325, and AF177297 and AF177326, respectively. 01475 # 2001 IUMS
AF177296 AF177325 AF177297 AF177326
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Comparison of sequence analysis of 16S--23S rDNA spacer regions, AFLP analysis and DNA--DNA hybridizations in Bradyrhizobium -- Willems et al. 51 (2): 623 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : ARDRA, restriction analysis of amplified 16S rDNA ; ITS, internal transcribed spacer. The GenBank/EMBL accession numbers for the ITS sequences determined in this work are AJ279264AJ279352. 01507 # 2001 IUMS
AJ279264 AJ279265 AJ279266 AJ279267 AJ279268 AJ279269 AJ279270 AJ279271 AJ279272 AJ279273 AJ279274 AJ279275 AJ279276 AJ279277 AJ279278 AJ279279 AJ279280 AJ279281 AJ279282 AJ279283 AJ279284 AJ279285 AJ279286 AJ279287 AJ279288 AJ279289 AJ279290 AJ279291 AJ279292 AJ279293 AJ279294 AJ279295 AJ279296 AJ279297 AJ279298 AJ279299 AJ279300 AJ279301 AJ279302 AJ279303 AJ279304 AJ279305 AJ279306 AJ279307 AJ279308 AJ279309 AJ279310 AJ279311 AJ279312 AJ279313 AJ279314 AJ279315 AJ279316 AJ279317 AJ279318 AJ279319 AJ279320 AJ279321 AJ279322 AJ279323 AJ279324 AJ279325 AJ279326 AJ279327 AJ279328 AJ279329 AJ279330 AJ279331 AJ279332 AJ279333 AJ279334 AJ279335 AJ279336 AJ279337 AJ279338 AJ279339 AJ279340 AJ279341 AJ279342 AJ279343 AJ279344 AJ279345 AJ279346 AJ279347 AJ279348 AJ279349 AJ279350 AJ279351 AJ279352 AJ279264 AJ279352
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Re-evaluation of the classical Mycoplasma lipophilum cluster (Weisburg et al. 1989) and description of two new clusters in the hominis group based on 16S rDNA sequences -- Pettersson et al. 51 (2): 633 -- International Journal of Systematic and Evolutionary Microbiology
Present address : 16400 Black Rock Rd, Germantown, MD 20874-3212, USA. Abbreviations : FCB, FlavobacteriumCytophagaBacteroides division ; ML, maximum-likelihood ; NJ, neighbour-joining. The GenBank accession numbers for the 16S rRNA gene sequences determined in this paper are AF221111AF221121. 01513 # 2001 IUMS
AF221111 AF221112 AF221113 AF221114 AF221115 AF221116 AF221117 AF221118 AF221119 AF221120 AF221121 AF221111 AF221121
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Amycolatopsis albidoflavus sp. nov -- Lee and Hah 51 (2): 645 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rDNA sequences of Amycolatopsis methanolica IMSNU 20055T, Amycolatopsis azurea IMSNU 20053T, Amycolatopsis fastidiosa IMSNU 20054T and Amycolatopsis orientalis IMSNU 20058T reported in this paper are AJ249135, AJ400709, AJ400710 and AJ400711, respectively. 01640 # 2001 IUMS
AJ249135 AJ400709 AJ400710 AJ400711
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Campylobacter hominis sp. nov., from the human gastrointestinal tract -- Lawson et al. 51 (2): 651 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : IMS, immunomagnetic separation. The EMBL accession number for the sequence reported in this paper is AJ251584 (NCTC 13146T ). 01437 # 2001 IUMS
AJ251584
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Hahella chejuensis gen. nov., sp. nov., an extracellular-polysaccharide-producing marine bacterium -- Lee et al. 51 (2): 661 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : EPS, extracellular polysaccharide. The GenBank accession number for the 16S rDNA sequence of Hahella chejuensis KCTC 2396T is AF195410. 01421 # 2001 IUMS
AF195410
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Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes -- Keswani and Whitman 51 (2): 667 -- International Journal of Systematic and Evolutionary Microbiology
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Actinomyces catuli sp. nov., from dogs -- Hoyles et al. 51 (2): 679 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession number for the 16S rRNA sequence of CCUG 41709T is AJ276805. 01642 # 2001 IUMS
AJ276805
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Aerococcus urinaehominis sp. nov., isolated from human urine -- Lawson et al. 51 (2): 683 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 42038bT is AJ278341. 01715 # 2001 IUMS
AJ278341
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Fig. 7. Phylogenetic tree of Rhodosporidium kratochvilovae and related species, obtained by parsimony analysis (heuristic search, random addition, nearest neighbour interchange, 100 maximum trees) of the D1/D2 region of the 26S rDNA. Branch lengths are proportional to the number of nucleotide differences and the numbers given on the branches are the bootstrap values ( 50 %) of 1000 replicates. GenBank accession numbers are indicated after species and strain designation.
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The GenBank accession number for the 26 rDNA D1/D2 sequence of Candida orba UCD-FST 84-833.1T is AF229034. 01679 # 2001 IUMS
AF229034
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LETTER TO THE EDITOR. Taxonomic ambiguities: a case history -- Gest and Favinger 51 (2): 707 -- International Journal of Systematic and Evolutionary Microbiology
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LETTER TO THE EDITOR. Rhodocista centenaria vs Rhodospirillum centenum: a reply to Gest and Favinger -- Tindall 51 (2): 711 -- International Journal of Systematic and Evolutionary Microbiology
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International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of staphylococci and streptococci -- Kloos and Hardie 51 (2): 715 -- International Journal of Systematic and Evolutionary Microbiology
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International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of staphylococci and streptococci -- Kloos et al. 51 (2): 717 -- International Journal of Systematic and Evolutionary Microbiology
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Recommendations of the Subcommittee on the taxonomy of Campylobacter and related bacteria -- Vandamme and On 51 (2): 719 -- International Journal of Systematic and Evolutionary Microbiology
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Recommended conservation of the names Streptococcus sanguis, Streptococcus rattus, Streptococcus cricetus, and seven other names included in the Approved Lists of Bacterial Names. Request for an Opinion -- Kilian 51 (2): 723 -- International Journal of Systematic and Evolutionary Microbiology
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Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion -- Euzeby and Tindall 51 (2): 725 -- International Journal of Systematic and Evolutionary Microbiology
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Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasites -- Hampl et al. 51 (3): 731 -- International Journal of Systematic and Evolutionary Microbiology
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Phylogenetic relationships among algae based on complete large-subunit rRNA sequences -- Ben Ali et al. 51 (3): 737 -- International Journal of Systematic and Evolutionary Microbiology
determined in this study (accession numbers can be found in Table 3) were added to the European LSU rRNA sequence database (De Rijk et al., 2000). Sequences were aligned with the DCSE sequence editor (De Rijk & De Wachter, 1993), taking into account both primary and secondary structure information. Neighbour-joining (Saitou & Nei, 1987) trees based on Kimura (1980) and substitution rate calibrated (SRC) distances taking into account among-site rate variation (Van de Peer et al., 1996b) were constructed and drawn with TREECON for Windows (Van de Peer & De Wachter, 1997b). Bootstrapped maximum-parsimony trees were constructed with PAUP* (Swofford, 1998). Maximum-likelihood trees were inferred by the PUZZLE program (Strimmer & von Haeseler, 1996). Secondary structure models were drawn with the software RNAViz (De Rijk & De Wachter, 1997), a versatile program developed to draw secondary structures of molecules in a fast and user-friendly way.
AF289035 AF289036 AF289037 AF289038 AF289038 AF289039 AF289040 AF289041 AF289042 AF289043 AF289044 AF289045 AF289045 AF289046 AF289046 AF289047 AF289047 AF289048 AF289048 AF289049 AF289049
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Phylogenetic position and inter-relationships of the osmotrophic euglenids based on SSU rDNA data, with emphasis on the Rhabdomonadales (Euglenozoa) -- Preisfeld et al. 51 (3): 751 -- International Journal of Systematic and Evolutionary Microbiology
Rhabdomonas gibba (Skuja) Pringsheim nom. nud. (SAG 1271-2), R. incurva (Fresenius) Klebs (SAG 235.80), Rhabdomonas intermedia Christen (SAG 238.80) and Rhabdospira spiralis Pringsheim (CCAP 1271\5), were grown in soil water medium 3c at 20 mC in the dark (accession numbers are shown on the figures). Eutreptia viridis Perty (SAG 1226-1c) AF157312 was cultivated under a 14 : 10 h light : dark photoperiod in brackish water medium 6 and Lepocinclis ovum (Ehrenberg) Lemmermann (SAG 1244-8) AF110419 in medium 3b (all media : Schlosser, 1994). $
AF157312 AF110419
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Phragmoplast-mediated cytokinesis in Trentepohlia: results of TEM and immunofluorescence cytochemistry -- Chapman et al. 51 (3): 759 -- International Journal of Systematic and Evolutionary Microbiology
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Phylogenetic position of a renal coccidium of the European green frogs, 'Isospora' lieberkuehni Labbe, 1894 (Apicomplexa: Sarcocystidae) and its taxonomic implications -- Modry et al. 51 (3): 767 -- International Journal of Systematic and Evolutionary Microbiology
This paper was presented at the XIIIth meeting of the International Society ) ! ) for Evolutionary Protistology in Ceske Budejovice, Czech Republic, 31 July4 August 2000. Sequence alignments from this paper are available as supplementary data in IJSEM Online (http ://ijs.sgmjournals.org). Abbreviation : Tv/Ts ratio, transversion/transition ratio. The GenBank accession number for the SSU rRNA sequence of Hyaloklossia lieberkuehni is AF298623. 01788 # 2001 IUMS
AF298623
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Phylogenetic analysis of chloroplast small-subunit rRNA genes of the genus Euglena Ehrenberg -- Milanowski et al. 51 (3): 773 -- International Journal of Systematic and Evolutionary Microbiology
This paper was presented at the XIIIth meeting of the International ) ! ) Society for Evolutionary Protistology in Ceske Budejovice, Czech Republic, 31 July4 August 2000. Abbreviations : ML, maximum-likelihood ; MP, maximum-parsimony ; 16S rDNA, chloroplast SSU rDNA. The GenBank accession numbers for chloroplast SSU rDNA (16S rDNA) sequences reported in this papers are given in Methods. 01750 # 2001 IUMS
X12890 X12890 AF289238 AF289239 AF289240 AF289241 AF289242 AF289243 AF289244 AF289245 AF289246 AF289248 AF289249 AF289250 AF289251 AF289252 AF289253 AF289254 AF289247
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Phylogenetic analysis of phagotrophic, phototrophic and osmotrophic euglenoids by using the nuclear 18S rDNA sequence -- Mullner et al. 51 (3): 783 -- International Journal of Systematic and Evolutionary Microbiology
This paper was presented at the XIIIth meeting of the International Society ) ! ) for Evolutionary Protistology in Ceske Budejovice, Czech Republic, 31 July4 August 2000. The GenBank accession numbers for the sequences of the nuclear 18S rRNA genes determined in this study are AF283306, AF283307, AF283309 AF283311, AF283313AF283316 and AY004245. 01800 # 2001 IUMS
AF283313 AF283314 AF283315 AF283316 AF283306 AF283307 AF283309 AF283311 AF283313 AF283316 AY004245
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VALIDATION LIST NO.80. Validation of publication of new names and new combinations previously effectively published outside the IJSEM -- 51 (3): 793 -- International Journal of Systematic and Evolutionary Microbiology
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NOTIFICATON LIST. Notification that new names and new combinations have appeared in volume 50, part 2, of the IJSEM -- 51 (3): 795 -- International Journal of Systematic and Evolutionary Microbiology
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The taxonomy of Streptomyces and related genera -- Anderson and Wellington 51 (3): 797 -- International Journal of Systematic and Evolutionary Microbiology
D44283 D44336 D44025 D44289 D44282 D44234 D44174 D44041 D44246 D44218 D44329 D44143 D44072 D44004 D44349 D44147 D44184 D44295 D44191 D44064 D44309 D44083 D44293 D44247 D44364
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'Candidatus Mycoplasma haemominutum', a low-virulence epierythrocytic parasite of cats -- Foley and Pedersen 51 (3): 815 -- International Journal of Systematic and Evolutionary Microbiology
F88506 U88564 U88563
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Differentiation between Campylobacter hyoilei and Campylobacter coli using genotypic and phenotypic analyses -- Dep et al. 51 (3): 819 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the sequences of C. hyoilei DNA inserts from recombinant plasmids pBT9810 and pBT9811 are AJ271334 and AJ271333, respectively. 01517 # 2001 IUMS
AJ271334 AJ271333
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Sphingomonas pituitosa sp. nov., an exopolysaccharide-producing bacterium that secretes an unusual type of sphingan -- Denner et al. 51 (3): 827 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FT-IR, Fourier-transform infrared ; PHB, poly--hydroxybutyrate. The EMBL accession number for the 16S rDNA sequence of Sphingomonas pituitosa strain EDIVT is AJ243751. 01454 # 2001 IUMS
AJ243751
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Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese -- Brennan et al. 51 (3): 843 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequences of strains LMG S-19264T and LMG S-19265T are AF267148 and AF267152, respectively. 01651 # 2001 IUMS
AF267148 AF267152
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Actinomyces funkei sp. nov., isolated from human clinical specimens -- Lawson et al. 51 (3): 853 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 42773T is AJ404889. 01757 # 2001 IUMS
AJ404889
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Corynebacterium capitovis sp. nov., from a sheep -- Collins et al. 51 (3): 857 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 39779T is AJ297402. 01721 # 2001 IUMS
AJ297402
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Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content -- Robertson et al. 51 (3): 861 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Clive and Vera Ramaciotti Centre for Gene Function Analysis, School of Biochemistry and Molecular Genetics, Faculty of Life Sciences, The University of New South Wales, Sydney, NSW 2052, Australia. Abbreviations : PC, phycocyanin ; PE, phycoerythrin ; IGS, intergenic spacer. The GenBank accession numbers for the 16S rDNA sequences determined in this paper are AF216942AF216955. The GenBank accession numbers for the sequences of the cpcBA-IGS and flanking regions determined in this paper are AF223428AF223465. 01520 # 2001 IUMS
AF216942 AF216943 AF216944 AF216945 AF216946 AF216947 AF216948 AF216949 AF216950 AF216951 AF216952 AF216953 AF216954 AF216955 AF223428 AF223429 AF223430 AF223431 AF223432 AF223433 AF223434 AF223435 AF223436 AF223437 AF223438 AF223439 AF223440 AF223441 AF223442 AF223443 AF223444 AF223445 AF223446 AF223447 AF223448 AF223449 AF223450 AF223451 AF223452 AF223453 AF223454 AF223455 AF223456 AF223457 AF223458 AF223459 AF223460 AF223461 AF223462 AF223463 AF223464 AF223465 AF216942 AF216955 AF223428 AF223465
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A proposal for the unification of five species of the cyanobacterial genus Microcystis Kutzing ex Lemmermann 1907 under the Rules of the Bacteriological Code -- Otsuka et al. 51 (3): 873 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Microbial Diversity Group, Kamaishi Laboratories, Marine Biotechnology Institute, Heita, Kamaishi, Iwate 026-0001, Japan. The DDBJ/EMBL/GenBank accession numbers for the 16S rDNA sequences of Microcystis strains used in this study are listed in Fig. 1. 01588 # 2001 IUMS
E05133 Y12608 Y12609 AJ133171
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Proposal to transfer Actinomadura carminata to a new subspecies of the genus Nonomuraea as Nonomuraea roseoviolacea subsp. carminata comb. nov -- Gyobu and Miyadoh 51 (3): 881 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA sequences described in this work are AB039960 (strain SF2303), AB039961 (Actinomadura carminata IFO 15903T) and AB039959 (Nonomuraea roseoviolacea IFO 14098T). 01610 # 2001 IUMS
AB039960 AB039961 AB039959
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Proposal to transfer some members of the genera Haemobartonella and Eperythrozoon to the genus Mycoplasma with descriptions of 'Candidatus Mycoplasma haemofelis', 'Candidatus Mycoplasma haemomuris', 'Candidatus Mycoplasma haemosuis' and 'Candidatus Mycoplasma wenyonii' -- Neimark et al. 51 (3): 891 -- International Journal of Systematic and Evolutionary Microbiology
Present address : 16400 Black Rock Road, Germantown, MD 208743212, USA. The GenBank accession numbers for the 16S rDNA sequences are given in the species descriptions. 01711 # 2001 IUMS
U88565 U88564 U88563 U95297 U82963 U00089 M23940 L10839 M23939 M23935 U26039 M23942 X52083 M24581 M23944 M23932 M25049 M22351 U88564 U95297 U88563 U95297 U88564 U88564 U88563 U95297 U88563 U95297 U88564 U82963 U88565 AF029394 AF016546 AF178676 AF178677 AF125879 AF125878 AJ002265 AF178676 AF178677 AF178677 AF178677 AF197337 AF029394 AF016546
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Phylogenetic positions of Clostridium novyi and Clostridium haemolyticum based on 16S rDNA sequences -- Sasaki et al. 51 (3): 901 -- International Journal of Systematic and Evolutionary Microbiology
The DDBJ accession numbers for the 16S rDNA sequences of C. haemolyticum strain ATCC 9650T, C. novyi type B strain ATCC 25758, C. novyi type A strains JCM 1406T and ATCC 19402 and C. novyi type C strain ATCC 27323 are AB037910, AB035087, AB045606, AB041866 and AB041865, respectively. 01732 # 2001 IUMS
AB037910 AB035087 AB045606 AB041866 AB041865
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Transfer of [Pseudomonas] lemoignei, a Gram-negative rod with restricted catabolic capacity, to Paucimonas gen. nov. with one species, Paucimonas lemoignei comb. nov -- Jendrossek 51 (3): 905 -- International Journal of Systematic and Evolutionary Microbiology
X65590 X65589 U49754 Y08846 X92555 X92555 Y10146 X74914 X67036 U96927 AB021424
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Rhizobium yanglingense sp. nov., isolated from arid and semi-arid regions in China -- Tan et al. 51 (3): 909 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : UPGMA, unweighted pair group method with arithmetic averages. The GenBank accession numbers for the 16S rRNA sequences of strains CCBAU 71462 and CCBAU 71623T are AF195031 and AF003375, respectively. 01504 # 2001 IUMS
AF195031 AF003375
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Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping -- Brisse and Verhoef 51 (3): 915 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : QRDR, quinolone resistance-determining region ; RAPD, randomly amplified polymorphic DNA ; UPGMA, unweighted pair-group method with arithmetic averages. The GenBank accession numbers for the gyrA sequences of strains sb1, sb7, sb9, sb10, sb17, sb18, sb31, sb39, sb55, sb59, sb67, sb69, sb78, sb93, sb113, sb118, sb131, ATCC 13883T, NCTC 11228, NCTC 49131, sb120, sb152, sb153, sb154, sb157, sb158, sb159, sb161, ATCC 33257T, ATCC 31898, ATCC 11297, ATCC 6908 and ATCC 33531T are AF303589AF303621, respectively. The GenBank accession numbers for the parC sequences of strains sb1, sb7, sb9, sb10, sb12, sb17, sb18, sb31, sb39, sb44, sb55, sb59, sb67, sb69, sb78, sb93, sb114, sb120, sb131, ATCC 13883T, NCTC 11228, NCTC 49131, sb152, sb153, sb154, sb157, sb158, sb159, sb161, ATCC 33257T, ATCC 31898, ATCC 11297, ATCC 6908 and ATCC 33531T are AF303622AF303655, respectively. 01653 # 2001 IUMS
AF303589 AF303590 AF303591 AF303592 AF303593 AF303594 AF303595 AF303596 AF303597 AF303598 AF303599 AF303600 AF303601 AF303602 AF303603 AF303604 AF303605 AF303606 AF303607 AF303608 AF303609 AF303610 AF303611 AF303612 AF303613 AF303614 AF303615 AF303616 AF303617 AF303618 AF303619 AF303620 AF303621 AF303622 AF303623 AF303624 AF303625 AF303626 AF303627 AF303628 AF303629 AF303630 AF303631 AF303632 AF303633 AF303634 AF303635 AF303636 AF303637 AF303638 AF303639 AF303640 AF303641 AF303642 AF303643 AF303644 AF303645 AF303646 AF303647 AF303648 AF303649 AF303650 AF303651 AF303652 AF303653 AF303654 AF303655 AF303589 AF303621 AF303622 AF303655
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Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov -- Drancourt et al. 51 (3): 925 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA and rpoB sequences of Klebsiella strains in this paper are given in Methods. 01693 # 2001 IUMS
AF130981 AF130983 AF130982 AF129440 AF129441 AF129443 AF129444 AF129442 AF253134 AF129446 AF129445 AF129447 AF129449 AF129450 AF129448 AF218573 AF129443 AF129441 AF129442
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Nocardia veterana sp. nov., isolated from human bronchial lavage -- Gurtler et al. 51 (3): 933 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rDNA sequence of strain DSM 44445T is AF278572. 01710 # 2001 IUMS
AF278572
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Proposal of Mycetocola gen. nov. in the family Microbacteriaceae and three new species, Mycetocola saprophilus sp. nov., Mycetocola tolaasinivorans sp. nov. and Mycetocola lacteus sp. nov., isolated from cultivated mushroom, Pleurotus ostreatus -- Tsukamoto et al. 51 (3): 937 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Yokohama Plant Protection Station, Kitanakadori 5-57, Naka-ku, Yokohama 231-0003, Japan. Abbreviation : MAFF, Ministry of Agriculture, Forestry and Fisheries Genebank, National Institute of Agrobiological Resources, Kannondai 2-1-2, Tsukuba, Ibaraki, 305-8602 Japan. The DDBJ accession numbers for the 16S rRNA gene sequences of strains CM-01T, CM-05T and CM-10T are AB012647, AB012646 and AB012648, respectively. 01636 # 2001 IUMS
AB012647 AB012646 AB012648
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Implications of alternative classifications and horizontal gene transfer for bacterial taxonomy -- Young 51 (3): 945 -- International Journal of Systematic and Evolutionary Microbiology
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Treponema parvum sp. nov., a small, glucuronic or galacturonic acid-dependent oral spirochaete from lesions of human periodontitis and acute necrotizing ulcerative gingivitis -- Wyss et al. 51 (3): 955 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Bethune International Peace Hospital, Shijiazhuang, People 's Republic of China. Abbreviations : ANUG, acute necrotizing ulcerative gingivitis ; GluA, glucuronic acid ; GalA, galacturonic acid. The GenBank accession numbers for the 16S rRNA gene sequences of strains OMZ 833T and OMZ 842 are AF302937 and AF302938, respectively. 01683 # 2001 IUMS
AF302937 AF302938
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Clostridium felsineum and Clostridium acetobutylicum are two distinct species that are phylogenetically closely related -- Tamburini et al. 51 (3): 963 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : RDP, Ribosomal Database Project. The GenBank accession numbers for the 16S rRNA sequences of Clostridium felsineum DSM 794T and NCIMB 10690T are AF270502 and AF270501, respectively. 01707 # 2001 IUMS
AF270502 AF270501
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Lactobacillus psittaci sp. nov., isolated from a hyacinth macaw (Anodorhynchus hyacinthinus) -- Lawson et al. 51 (3): 967 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CCUG 42378T is AJ272391. 01595 # 2001 IUMS
AJ272391
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Taylorella asinigenitalis sp. nov., a bacterium isolated from the genital tract of male donkeys (Equus asinus) -- Jang et al. 51 (3): 971 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : CEM, contagious equine metritis ; CF, complement fixation ; IFA, indirect fluorescent antibody ; MRVP, methyl red/Voges Proskauer. The GenBank accession numbers for the 16S rRNA gene sequence of T. asinigenitalis strains UCD-1T, UK-1 and UK-2 and T. equigenitalis strains 10783 and 96-178 are AF067729, AF297174, AF297175, AF297172 and AF297173, respectively. 01659 # 2001 IUMS
AF067729 AF297174 AF297175 AF297172 AF297173
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Comamonas nitrativorans sp. nov., a novel denitrifier isolated from a denitrifying reactor treating landfill leachate -- Etchebehere et al. 51 (3): 977 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : ARDRA, amplified 16S rDNA restriction analysis. The EMBL accession number for the 16S rDNA sequence of strain 23310T is AJ251577. 01677 # 2001 IUMS
AJ251577
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Zobellia galactanovorans gen. nov., sp. nov., a marine species of Flavobacteriaceae isolated from a red alga, and classification of [Cytophaga] uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Zobellia uliginosa gen. nov., comb. nov -- Barbeyron et al. 51 (3): 985 -- International Journal of Systematic and Evolutionary Microbiology
! Present address : Institut Universitaire Europeen de la Mer, UMR 6539 ! # CNRS-Universite de Bretagne Occidentale,Technopole Brest-Iroise, Place ! Nicolas Copernic, 29280 Plouzane, Bretagne, France. The GenBank accession number for the 16S rDNA sequence of strain DsijT is AF208293. 01455 # 2001 IUMS
AF208293
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Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge -- Gumaelius et al. 51 (3): 999 -- International Journal of Systematic and Evolutionary Microbiology
These authors contributed equally to this work. The GenBank accession numbers for the 16S rRNA gene sequences of strains 110, 123T, 2.99g, 5.38g and P17 are AF233876, AF233877, AF233878, AF233879 and AF233880, respectively. 01578 # 2001 IUMS
AF233876 AF233877 AF233878 AF233879 AF233880
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Reclassification of Cellulomonas cellulans (Stackebrandt and Keddie 1986) as Cellulosimicrobium cellulans gen. nov., comb. nov -- Schumann et al. 51 (3): 1007 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Promicromonospora sukumoe is AJ272024. 01572 # 2001 IUMS
AJ272024
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Mesorhizobium chacoense sp. nov., a novel species that nodulates Prosopis alba in the Chaco Arido region (Argentina) -- Velazquez et al. 51 (3): 1011 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : LMW RNA, low-molecular-weight RNA ; PNP, para-nitrophenyl substrates ; SCE, staircase electrophoresis. The GenBank accession number for the 16S rRNA sequence of Mesorhizobium chacoense LMG 19008T is AJ278249. 01473 # 2001 IUMS
AJ278249
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Agrobacterium larrymoorei sp. nov., a pathogen isolated from aerial tumours of Ficus benjamina -- Bouzar and Jones 51 (3): 1023 -- International Journal of Systematic and Evolutionary Microbiology
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Shewanella japonica sp. nov -- Ivanova et al. 51 (3): 1027 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Swinburne University of Technology, IRIS, 533545 Burwood Road, Hawthorn, Melbourne, Victoria 3122, Australia. Abbreviations : EPA, eicosapentaenoic acid ; FA, fatty acid ; PUFA, polyunsaturated fatty acid. The GenBank accession number for the 16S rDNA sequence of Shewanella japonica KMM 3299T is AF145921. 01611 # 2001 IUMS
AF145921
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Isolation of Desulfomicrobium orale sp. nov. and Desulfovibrio strain NY682, oral sulfate-reducing bacteria involved in human periodontal disease -- Langendijk et al. 51 (3): 1035 -- International Journal of Systematic and Evolutionary Microbiology
! ! ! Present address : Departement de Biochimie Medicale, Faculte de ! ! ' ' Medecine, CMU, Universite de Geneve, 1 rue Michel-Servet, 1211 Geneve 4, Switzerland. Abbreviation : SRB, sulfate-reducing bacteria. The GenBank/EMBL accession numbers for the 16S rDNA sequences of strains NY678T, NY676, NY677, NY679, NY683, NY682 and FD1 are AJ251623, AJ251628, AJ251629, AJ251624, AJ251627, AJ251630 and AJ251631, respectively. 01733 # 2001 IUMS
AJ251623 AJ251628 AJ251629 AJ251624 AJ251627 AJ251630 AJ251631
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Revival of the genus Lentzea and proposal for Lechevalieria gen. nov -- Labeda et al. 51 (3): 1045 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the almost complete sequence of the 16S rDNA gene of Saccharothrix aerocolonigenes NRRL B-16137 is AF174435. 01477
AF174435
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Albibacter methylovorans gen. nov., sp. nov., a novel aerobic, facultatively autotrophic and methylotrophic bacterium that utilizes dichloromethane -- Doronina et al. 51 (3): 1051 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DCM, dichloromethane ; GSH, reduced glutathione ; PMS, phenazine methosulfate ; RuBP, ribulose bisphosphate. The GenBank accession number for the 16S rDNA sequence of Albibacter methylovorans DM10T is AF273213. 01691 # 2001 IUMS
AF273213
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Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize L-sorbose to 2-keto-L-gulonic acid -- Urbance et al. 51 (3): 1059 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Microbiology, University of Wisconsin - La Crosse, La Crosse, WI 54601, USA. Abbreviation : 2-KLG, 2-keto-L-gulonic acid. The GenBank accession numbers for the 16S rDNA sequences determined in this work are AF136846AF136850. 01592 # 2001 IUMS
AF136846 AF136847 AF136848 AF136849 AF136850 AF136846 AF136850
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Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov. and emendation of description -- Ivanova et al. 51 (3): 1071 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Swinburne University of Technology, IRIS, 533545 Burwood Road, Hawthorn, Melbourne, Victoria 3122, Australia. The GenBank accession numbers for the 16S rDNA sequences of Pseudoalteromonas tetraodonis KMM 458T and strain IAM 14160T are AF214729 and AF214730, respectively. 01609 # 2001 IUMS
AF214729 AF214730
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Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of the genus Sporosarcina -- Yoon et al. 51 (3): 1079 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rDNA sequence of strain SW28T and for the newly determined 16S rDNA sequence of Sporosarcina ureae DSM 2281T are AF202056 and AF202057, respectively. 01456 # 2001 IUMS
AF202056 AF202057
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Bacillus jeotgali sp. nov., isolated from jeotgal, Korean traditional fermented seafood -- Yoon et al. 51 (3): 1087 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rDNA sequences of strains YKJ10T and YKJ-11 are AF221061 and AF221062, respectively. 01498 # 2001 IUMS
AF221061 AF221062
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Amycolatopsis rubida sp. nov., a new Amycolatopsis species from soil -- Huang et al. 51 (3): 1093 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Biology, HeBei University, Baoding 071002, People 's Republic of China. The GenBank accession number for the 16S rDNA sequence of strain 13.4T (l AS 4.1541T l JCM 10871T) is AF222022. 01700 # 2001 IUMS
AF222022
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Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples -- Coenye et al. 51 (3): 1099 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA sequences of strains LMG 16225T (l CCUG 31961T), LMG 16307 and LMG 19076T (l CCUG 42236T) described in this work are respectively AF215705, AF215706 and AF215704. 01503 # 2001 IUMS
AF215705 AF215706 AF215704
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'Candidatus Phytoplasma brasiliense', a new phytoplasma taxon associated with hibiscus witches' broom disease -- Montano et al. 51 (3): 1109 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : AY, aster yellows ; CX, Canadian peach X ; CYE ( l CYE-C), clover yellow edge ; EY, elm yellows ; PPWB, pigeon pea witches' broom ; PWB, potato witches' broom ; SPWB, sweet potato witches' broom. The GenBank accession number for the phytoplasma strain HibWB26 sequence determined in this study is AF147708. 01496 # 2001 IUMS
AF147708
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Clostridium uliginosum sp. nov., a novel acid-tolerant, anaerobic bacterium with connecting filaments -- Matthies et al. 51 (3): 1119 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Hercules Inc., 500 Hercules Road, Wilmington, DE 19808, USA. The EMBL accession number for the 16S rRNA gene sequence of CK55T is AJ276992. 01619 # 2001 IUMS
AJ276992
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Transfer of Thermobacteroides leptospartum and Clostridium thermolacticum as Clostridium stercorarium subsp. leptospartum subsp. nov., comb. nov. and C. stercorarium subsp. thermolacticum subsp. nov., comb. nov -- Fardeau et al. 51 (3): 1127 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Thermobacteroides leptospartum is AF266461. 01654 # 2001 IUMS
AF266461
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Transfer of Natrialba asiatica B1T to Natrialba taiwanensis sp. nov. and description of Natrialba aegyptiaca sp. nov., a novel extremely halophilic, aerobic, non-pigmented member of the Archaea from Egypt that produces extracellular poly(glutamic acid) -- Hezayen et al. 51 (3): 1133 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the complete 16S rDNA sequence of strain 40T is AF251941. 01680 # 2001 IUMS
AF251941
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Phylogenetic relationships of Anaplasma marginale and 'Ehrlichia platys' to other Ehrlichia species determined by GroEL amino acid sequences -- Yu et al. 51 (3): 1143 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for Anaplasma marginale groEL and ` Ehrlichia platys ' groEL are AF165812 and AY008300, respectively. 01644 # 2001 IUMS
AF165812 AY008300
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Streptococcus ovis sp. nov., isolated from sheep -- Collins et al. 51 (3): 1147 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of Streptococcus ovis CCUG 39485T is Y17358. 01372 # 2001 IUMS
Y17358
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Legionella drozanskii sp. nov., Legionella rowbothamii sp. nov. and Legionella fallonii sp. nov.: three unusual new Legionella species -- Adeleke et al. 51 (3): 1151 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : BCYE, buffered charcoal yeast extract ; CFA, cellular fatty acid ; LLAP, Legionella-like amoebal pathogen ; SAT, slide agglutination test. The GenBank accession numbers for approximately 600 bases of sequence of the mip gene of Legionella lytica and strains LLAP-1T, LLAP-6T, LLAP-7, LLAP-9, LLAP-10T and 4313-GER-E are AF148982, AF148983, AF148984, AF148985, AF148986, AF148987 and AF148988, respectively. 01430 # 2001 IUMS
AF148982 AF148983 AF148984 AF148985 AF148986 AF148987 AF148988
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Alkalibacterium olivoapovliticus gen. nov., sp. nov., a new obligately alkaliphilic bacterium isolated from edible-olive wash-waters -- Ntougias and Russell 51 (3): 1161 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : EWW, edible-olive wash-waters ; PL, phospholipid ; PG, phosphatidylglycerol ; PS, phosphatidylserine ; DPG, diphosphatidylglycerol ; LGS, lysophosphatidylglycerol ; LPS, lysophosphatidylserine. The GenBank accession numbers for the 16S rDNA sequences of strains WW2-SN4aT, WW2-SN4c and WW2-SN5 are AF143511, AF143512 and AF14351, respectively. 01415 # 2001 IUMS
AF143511 AF143512
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Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea -- Yoon et al. 51 (3): 1171 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FAME, fatty acid methyl ester ; MA, marine agar ; TSA(B), trypticase soy agar (broth). The GenBank accession number for the 16S rDNA sequence of strain SW32T is AF251143. 01631 # 2001 IUMS
AF251143
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Porphyromonas gulae sp. nov., an anaerobic, Gram-negative coccobacillus from the gingival sulcus of various animal hosts -- Fournier et al. 51 (3): 1179 -- International Journal of Systematic and Evolutionary Microbiology
# Present address : Service Canadien des Forets, Centre de foresterie des ! Laurentides, 1055 rue du P.E.P.S., C.P. 3800, Sainte-Foy, Quebec, Canada G1V 4C7. Present address : Le Grand Jaure, 31 voie romaine, 24100 Lambras, France. Abbreviations : -GAL, -galactosidase ; -NAG, N-acetyl--Dglucosaminidase ; PA, phenylacetic acid ; RAPD, randomly amplified polymorphic DNA ; UPGMA, unweighted pair group method with arithmetic averages. The GenBank accession numbers for the 16S rRNA gene sequences of P. gulae sp. nov. isolates Loup 1T (ATCC 51700T ), Chat 3.1, Ours 3.1, B 243, Chien 4.2 and Coyote 1.5.1 are AF208290, AF285871, AF285872, AF285874, AF285873 and AF287986, respectively. 01488 # 2001 IUMS
AF208290 AF285871 AF285872 AF285874 AF285873 AF287986
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Abbreviation : UPGMA, unweighted pair group method with arithmetic average. The DDBJ/EMBL/GenBank accession numbers for the cytochrome b partial sequences are AB040614AB040666 and AB041047AB041051. 01627 # 2001 IUMS
AB040614 AB040615 AB040616 AB040617 AB040618 AB040619 AB040620 AB040621 AB040622 AB040623 AB040624 AB040625 AB040626 AB040627 AB040628 AB040629 AB040630 AB040631 AB040632 AB040633 AB040634 AB040635 AB040636 AB040637 AB040638 AB040639 AB040640 AB040641 AB040642 AB040643 AB040644 AB040645 AB040646 AB040647 AB040648 AB040649 AB040650 AB040651 AB040652 AB040653 AB040654 AB040655 AB040656 AB040657 AB040658 AB040659 AB040660 AB040661 AB040662 AB040663 AB040664 AB040665 AB040666 AB041047 AB041048 AB041049 AB041050 AB041051 AB040614 AB040666 AB041047 AB041051
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! Abbreviations : ACG, Area de Conservacion Guanacaste ; CTAB, cetyltrimethylammonium bromide. The GenBank accession numbers for the sequences reported in this paper are AF251552AF251554. 01602 # 2001 IUMS
AF251552 AF251553 AF251554 AF251552 AF251554
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The DDBJ accession numbers for the 18S rDNA sequences of Bensingtonia thailandica strains TY-138T, TY-188, TY-191 and TY-223 are AB040114, AB040115, AB040116 and AB040117, respectively. 01622 # 2001 IUMS
AB040114 AB040115 AB040116 AB040117
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Candida sorbosivorans sp. nov., a new member of the genus Candida Berkhout -- James et al. 51 (3): 1215 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 26S rDNA sequence of the D1/D2 region of NCYC 2938T is AJ277846. 01675 # 2001 IUMS
AJ277846
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Present address : Yothi Research Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 73/1 Rama VI Road, Bangkok 10400, Thailand. The GenBank accession numbers for the 28S rDNA D1/D2 sequences of Trichosporon debeurmannianum sp. nov. and Trichosporon dermatis sp. nov. are AB044568 and AB044569, respectively. 01705 # 2001 IUMS
AB044568 AB044569
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VALIDATION LIST NO. 81. Validation of publication of new names and new combinations previously effectively published outside the IJSEM -- Bacteriology International Committee on Systematics 51 (4): 1229 -- International Journal of Systematic and Evolutionary Microbiology
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NOTIFICATON LIST. Notification that new names and new combinations have appeared in volume 51, part 3, of the IJSEM -- Bacteriology International Committee on Systematics 51 (4): 1231 -- International Journal of Systematic and Evolutionary Microbiology
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Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica -- Humphry et al. 51 (4): 1235 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Flavobacterium frigidarium is AF162266. 01616 # 2001 IUMS
AF162266
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Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine -- Takai et al. 51 (4): 1245 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Deep-sea Micro-organisms Research Group (DEEPSTAR), Japan Marine Science and Technology Center (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan. Abbreviations : FAMEs, fatty acid methyl esters ; Ga, Giga-annum ; kmbls, km below land surface ; MSD, mass selective detector ; PLFA, phospholipid fatty acid. The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of SAGM1T is AB037677. 01674 # 2001 IUMS
AB037677
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Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella -- von Wintzingerode et al. 51 (4): 1257 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : FBR, fluidized bed reactor. The GenBank/EMBL accession numbers for the sequences of strain Se1111RT homologous to the ompA and risA genes of B. avium are AJ242599 and AJ242553, respectively. 01714 # 2001 IUMS
AJ242599 AJ242553
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Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov -- Behrendt et al. 51 (4): 1267 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rDNA sequences of Microbacterium foliorum P 333/02T (l DSM 12966T l LMG 19580T) and Microbacterium phyllosphaerae P 369/06T (l DSM 13468T l LMG 19581T) are AJ249780 and AJ277840, respectively. 01662 # 2001 IUMS
AJ249780 AJ277840
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Streptococcus australis sp. nov., a novel oral streptococcus -- Willcox et al. 51 (4): 1277 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA sequence (1336 bases) of strain AI-1T is AF184974. 01406 # 2001 IUMS
AF184974
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Thalassomonas viridans gen. nov., sp. nov., a novel marine gamma-proteobacterium -- Macian et al. 51 (4): 1283 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL accession numbers for the 16S rRNA sequences of Thalassomonas viridans CECT 5082 and CECT 5083T are AJ294747 and AJ294748, respectively. 01660 # 2001 IUMS
AJ294747 AJ294748
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Samsonia erythrinae gen. nov., sp. nov., isolated from bark necrotic lesions of Erythrina sp., and discrimination of plant-pathogenic Enterobacteriaceae by phenotypic features -- Sutra et al. 51 (4): 1291 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain CFBP 5236T is AF273037. 01690 # 2001 IUMS
AF273037
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Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants -- Fuentes-Ramirez et al. 51 (4): 1305 -- International Journal of Systematic and Evolutionary Microbiology
! ! ! Present address : Centro de Investigaciones Microbiologicas, Instituto de Ciencias, Benemerita Universidad Autonoma de Puebla, Puebla, Mexico. Abbreviations : ARDRA, amplified rDNA restriction analysis ; MLEE, multilocus enzyme electrophoresis. The GenBank accession numbers for the 16S rDNA sequences of strains CFN-Cf55T and CFN-Ca54T are AF111841 and AF192761, respectively. 01461 # 2001 IUMS
AF111841 AF192761
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DNA--DNA hybridization study of Bradyrhizobium strains -- Willems et al. 51 (4): 1315 -- International Journal of Systematic and Evolutionary Microbiology
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Actinomyces suimastitidis sp. nov., isolated from pig mastitis -- Hoyles et al. 51 (4): 1323 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene of CCUG 39276T is AJ277385. 01667 # 2001 IUMS
AJ277385
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Thermosipho geolei sp. nov., a thermophilic bacterium isolated from a continental petroleum reservoir in Western Siberia -- L'Haridon et al. 51 (4): 1327 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain SL31T is AJ272022 01655 # 2001 IUMS
AJ272022
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Thermoanaerobacter tengcongensis sp. nov., a novel anaerobic, saccharolytic, thermophilic bacterium isolated from a hot spring in Tengcong, China -- Xue et al. 51 (4): 1335 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain MB4T is AF209708. 01533 # 2001 IUMS
AF209708
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Comparative ribotyping of Staphylococcus intermedius isolated from members of the Canoidea gives possible evidence for host-specificity and co-evolution of bacteria and hosts -- Aarestrup 51 (4): 1343 -- International Journal of Systematic and Evolutionary Microbiology
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Corynebacterium testudinoris sp. nov., from a tortoise, and Corynebacterium felinum sp. nov., from a Scottish wild cat -- Collins et al. 51 (4): 1349 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequences of strains CCUG 41823T and CCUG 39943T are AJ295841 and AJ401282, respectively. 01782 # 2001 IUMS
AJ295841 AJ401282
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Phylogeny of Rickettsia spp. inferred by comparing sequences of 'gene D', which encodes an intracytoplasmic protein -- Sekeyova et al. 51 (4): 1353 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Institute of Virology, Slovak Academy of Sciences, Dubravska cesta, 9, 84246 Bratislava, Slovak Republic. Abbreviations : SFG, spotted fever group ; TG, typhus group. The GenBank accession numbers for the nucleotide sequences reported in this paper are given in Methods. 01540 # 2001 IUMS
U01133 AF163005 AF151724 AF163007 AF187982 AF213016 AF155056 AF196973 AF163009 AF155058 AF155055 AF163003 AF151725 AF163002 AF155059 AF200340 AF155053 AF163000 AF163001 AF163008 AF155057 AF155054 AF163004 AF188482 AF163005 AB003696 AJ235272
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Simplified technique for identification of the aerobic spore-forming bacteria by phenotype -- Reva et al. 51 (4): 1361 -- International Journal of Systematic and Evolutionary Microbiology
Strains were obtained from the following culture collections : ATCC, American Type Culture Collection, Manassas, VA, USA ; DSM, German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany ; UCM, Ukrainian Collection of Microorganisms, Kyiv, Ukraine ; VKM, All-Russian Collection of Microorganisms, Pushchino, Russia. Strain accession numbers are from the UCM or are our work numbers unless otherwise stated. Species Bacillus badius Bacillus cereus Bacillus cereus var. mycoides Bacillus circulans Bacillus coagulans ` Bacillus endophyticus ' ` Bacillus entomocidus ' Bacillus lentus Bacillus licheniformis ` Bacillus longissimus ' Bacillus megaterium Bacillus pumilus Bacillus sphaericus Bacillus subtilis Strains UCM B-5820 UCM B-5650T (DSM 31T) ; 5652 ; 5653 ; 5655 ; 5656 ; 5659 ; 5671 ; 5673 UCM B-5674 UCM B-5841 (ATCC 9966) ; 5845 (VKM B-729) UCM B-5850T (DSM 1T) UCM B-5715 ; 5908 ; 5910 ; 5912 UCM B-5900 (ATCC 19268) UCM B-5906T (DSM 9T) UCM B-5501T (DSM 13T) ; 5502 ; 5503 ; 5506 ; 5508 ; 5510 ; 5511 ; 5512 ; 5513 ; 5514 UCM B-5880 (DSM 352) UCM B-5723 (ATCC 9885) ; 5714 ; 5716 ; 5718 ; 5719 UCM B-5604T (DSM 27T) ; 5601 ; 5602 ; 5609 ; 5610 ; 5617 UCM B-5901T (DSM 28T) ; 5902 UCM B-5006T (DSM 10T) ; 5001 (ATCC 10774) ; 5002 ; 5007 ; 5008 ; 5009 ; 5010 ; 5012 ; 5014 ; 5016 ; 5017 ; 5018 ; 5019 ; 5021 ; 5029 ; 5036 ; 5042 ; 5044 ; 5050 ; 5071 ; 5074 ; 5075 ; 5121 ; 5111 ; 5112 ; 5113 ; 5127 UCM B-5680T (ATCC 19270T) UCM B-5530 ; 5843 ; 5844 ; 5715 ; 5908 ; 5910 ; 5911 ; 9DT ; 7-91D ; 76D ; 103D ; 106D ; 107D ; 108D ; 109D ; 111D ; 115D ; 119D ; 121D ; 1r ; 2r UCM B-5830T (DSM 30T) UCM B-5870T (DSM 25T) UCM B-5904 UCM B-5803T (DSM 24T) ; 5800 UCM B-5760T (DSM 36T) ; 5756 ; 5757 ; 5758 ; 5759 UCM B-5909 (VKM B-748) UCM B-5907 (DSM 26)
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Propionibacterium microaerophilum sp. nov., a microaerophilic bacterium isolated from olive mill wastewater -- Koussemon et al. 51 (4): 1373 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain M5T is AF234623. 01629 # 2001 IUMS
AF234623
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Vibrio shiloi sp. nov., the causative agent of bleaching of the coral Oculina patagonica -- Kushmaro et al. 51 (4): 1383 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL accession number for the 16S rDNA sequence of Vibrio shiloi AK1T is AF007115. 01624 # 2001 IUMS
AF007115
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Phylogeny of the seal mycoplasmas Mycoplasma phocae corrig., Mycoplasma phocicerebrale corrig. and Mycoplasma phocirhinis corrig. based on sequence analysis of 16S rDNA -- Heldtander Konigsson et al. 51 (4): 1389 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequences of M. phocicerebrale, M. phocirhinis and M. phocae are AF304323, AF304324 and AF304325, respectively. 01713 # 2001 IUMS
AF304323 AF304324 AF304325
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A physical and genetic map of the Mycoplasma flocculare ATCC 27716 chromosome reveals large genomic inversions when compared with that of Mycoplasma hyopneumoniae strain J(T) -- Blank and Stemke 51 (4): 1395 -- International Journal of Systematic and Evolutionary Microbiology
Conservation of rare restriction sites between the two organisms was not apparent. Exceptions to this are the conserved Asp718 sites in the 16S and 23S genes of both species (GenBank accession numbers E02783, X68421 and L22210). The 5S rRNA gene of M. flocculare is separated from the 16S23S rRNA operon, as in M. hyopneumoniae (Taschke et al., 1986). Conservation of the recA, ptsII and glyT genes near the 5S gene in both organisms indicates that this separation is ancestral. Unfortunately, attempts at probing the M. flocculare genome with the ordered cosmid library of M. hyopneumoniae strain JT were unhelpful for genomic comparison, most probably due to the low level (10 %)
E02783 X68421 L22210
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Facklamia miroungae sp. nov., from a juvenile southern elephant seal (Mirounga leonina) -- Hoyles et al. 51 (4): 1401 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL accession number for the 16S rRNA sequence of CCUG 42728T is AJ277381. 01801 # 2001 IUMS
AJ277381
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Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses -- Takeuchi et al. 51 (4): 1405 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : BChl, bacteriochlorophyll ; GSLs, glycosphingolipids. The DDBJ accession numbers for the 16S rDNA sequences of Sphingomonas spp. IFO 15914, IFO 15496, IFO 15497, IFO 15495, IFO 15915 and IFO 15917 and Sphingomonas herbicidovorum IFO 16415T are AB033945AB033950 and AB042233, respectively. 01412 # 2001 IUMS
AB033945 AB033946 AB033947 AB033948 AB033949 AB033950 AB033945 AB033950 AB042233
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Nocardia cyriacigeorgici sp. nov -- Yassin et al. 51 (4): 1419 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain DSM 44484T is AF282889. 01673 # 2001 IUMS
AF282889
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Hydrogenobacter subterraneus sp. nov., an extremely thermophilic, heterotrophic bacterium unable to grow on hydrogen gas, from deep subsurface geothermal water -- Takai et al. 51 (4): 1425 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DDW, distilled deionized water ; SEM-EDS, scanning electron microscopy-energy-dispersive X-ray spectroscopy. The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of Hydrogenobacter subterraneus strain HGP1T is AB026268. 01694 # 2001 IUMS
AB026268
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Nonomuraea dietzii sp. nov -- Stackebrandt et al. 51 (4): 1437 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rDNA sequences determined in this study are AJ269555 (DSM 43748T), AJ278220 (DSM 44320T), AJ278221 (DSM 43767T) and AJ404230 (DSM 43937T). 01819 # 2001 IUMS
AJ269555 AJ278220 AJ278221 AJ404230
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Transfer of Halomonas canadensis and Halomonas israelensis to the genus Chromohalobacter as Chromohalobacter canadensis comb. nov. and Chromohalobacter israelensis comb. nov -- Arahal et al. 51 (4): 1443 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rRNA gene sequences of Halomonas canadensis ATCC 43984T, Halomonas israelensis ATCC 43985T and Halomonas salina F8-11T are AJ295143, AJ295144 and AJ295145, respectively. 01663 # 2001 IUMS
AJ295143 AJ295144 AJ295145
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Vibrio lentus sp. nov., isolated from Mediterranean oysters -- Macian et al. 51 (4): 1449 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : ADH, arginine dihydrolase ; TCBS, thiosulfate/citrate/bile salts/sucrose. The GenBank/EMBL accession numbers for the 16S rRNA gene sequences of Vibrio lentus CECT 5110T and CECT 5293 are AJ278881 and AJ278880, respectively. 01697 # 2001 IUMS
AJ278881 AJ278880
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Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174 -- Arahal et al. 51 (4): 1457 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rRNA gene sequences of Halomonas elongata DSM 3043 and ATCC 33174 are AJ295146 and AJ295147, respectively. 01735 # 2001 IUMS
AJ295146 AJ295147
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Limnobacter thiooxidans gen. nov., sp. nov., a novel thiosulfate-oxidizing bacterium isolated from freshwater lake sediment -- Spring et al. 51 (4): 1463 -- International Journal of Systematic and Evolutionary Microbiology
Present address : DSMZDeutsche Sammlung von Mikroorganismen und Zellkulturen, Mascheroder Weg 1b, D-38124 Braunschweig, Germany. Abbreviations : PHB, polyhydroxybutyrate ; pNA, para-nitroanilide ; pNP, para-nitrophenyl. The EMBL/GenBank accession numbers for the 16S rRNA gene sequences of Limnobacter thiooxidans CS-K2T and strain ` Thiobacillus ' Q are AJ289885 and AJ289884, respectively. 01740 # 2001 IUMS
AJ289885 AJ289884
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Description of Tropheryma whipplei gen. nov., sp. nov., the Whipple's disease bacillus -- La Scola et al. 51 (4): 1471 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : HEL, human embryonic lung ; ITS, internal transcribed spacer ; PAS, periodic acidSchiff. The GenBank accession numbers for the 16S rDNA, ITS and 23S rDNA domain III sequences of strain Twist-MarseilleT are AF251035, AF248312 and AF248313, respectively. 01689 # 2001 IUMS
AF251035 AF248312 AF248313
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Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates -- Coenye et al. 51 (4): 1481 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : AFLP, amplified fragment length polymorphism ; CF, cystic fibrosis. The GenBank accession numbers for the recA gene sequences of B. ambifaria strains LMG 19182T, R-8863 and R-5142 and B. cepacia genomovar VI strain LMG 18943 are AF323985, AF143975, AF143801 and AF323971, respectively. 01692 # 2001 IUMS
AF323985 AF143975 AF143801 AF323971
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Sphingomonas aquatilis sp. nov., Sphingomonas koreensis sp. nov. and Sphingomonas taejonensis sp. nov., yellow-pigmented bacteria isolated from natural mineral water -- Lee et al. 51 (4): 1491 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : Q-10, ubiquinone 10. The GenBank accession numbers for the 16S rDNA sequences of strains JSS7T, JSS26T, JSS28 and JSS54T are respectively AF131295, AF131296, AF031240 and AF131297. 01470 # 2001 IUMS
AF131295 AF131296 AF031240 AF131297
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Pseudoalteromonas ulvae sp. nov., a bacterium with antifouling activities isolated from the surface of a marine alga -- Egan et al. 51 (4): 1499 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA sequences of isolates UL12T and UL13 are AF172987 and AF172988, respectively. 01585 # 2001 IUMS
AF172987 AF172988
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Pseudonocardia kongjuensis sp. nov., isolated from a gold mine cave -- Lee et al. 51 (4): 1505 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rDNA sequence of strain LM 157T is AJ252833. 01686 # 2001 IUMS
AJ252833
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Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium -- Yoon et al. 51 (4): 1511 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : ITS, internally transcribed spacer. The GenBank accession number for the 16S rDNA sequence of strain JG07T is AF144750. The GenBank accession numbers for the 16S23S rDNA ITS sequences of Planococcus citreus DSM 20549T, Planococcus kocurii DSM 20747T, Planococcus okeanokoites IFO 12536T and strain JG07T and Planococcus mcmeekinii S23F2T are AF145717AF145720 and AF228699, respectively. 01605 # 2001 IUMS
AF145717 AF145718 AF145719 AF145720 AF144750 AF145717 AF145720 AF228699
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Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus -- Ezaki et al. 51 (4): 1521 -- International Journal of Systematic and Evolutionary Microbiology
Bacterial strains and 16S rDNA sequences. The strains and 16S rDNA accession numbers of the peptostreptococci and reference species used in this study are listed in Table 1. Analysis of sequence data. About 1440 bp spanning positions 501490 of 16S rDNA sequences were used for multiple alignment. rDNA sequences were aligned by using CLUSTAL W (Thompson et al., 1994). Phylogenetic distances were calculated by the neighbour-joining method (Saitou & Nei, 1986) with and without gaps. Bootstrap analysis was performed 1000 times and the results are indicated in Fig. 1.
D14145 D14152 D14153 M59057 X73450 X73451 M59109 M59103 M59105 D14148 L34613 D14149 D14143 X55797 L04168 D14138 Y07839 D14140 D14147 Y07840 D14141 D14154 Y07841 D14139 D14142 D14146 D14145 D14152 D14153 X85098 X85099 X85100 X83430 D14136 D14155 L76602 X85101 D14144 L76604 X76650 D14151 AB038359 AB038361 AB038359 AB038361 AB038360
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Agromyces luteolus sp. nov., Agromyces rhizospherae sp. nov. and Agromyces bracchium sp. nov., from the mangrove rhizosphere -- Takeuchi and Hatano 51 (4): 1529 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : DAB, 2,4-diaminobutyric acid. The DDBJ accession numbers for the 16S rDNA sequences determined in this study are AB023356AB023359. 01776 # 2001 IUMS
AB023356 AB023357 AB023358 AB023359 AB023356 AB023359
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Thermoanaerobacter yonseiensis sp. nov., a novel extremely thermophilic, xylose-utilizing bacterium that grows at up to 85 degrees C -- Kim et al. 51 (4): 1539 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Thermoanaerobacter yonseiensis strain KB-1TP is AF212925. 01643 # 2001 IUMS
AF212925
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Pseudomonas kilonensis sp. nov., a bacterium isolated from agricultural soil -- Sikorski et al. 51 (4): 1549 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession numbers for the rrs gene sequences of strains 520-1, 520-20T, CFBP 11076T and CFBP 11874 are respectively AJ292381, AJ292426, AJ293858 and AJ293859. 01772 # 2001 IUMS
AJ292381 AJ292426 AJ293858 AJ293859
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Bartonella schoenbuchii sp. nov., isolated from the blood of wild roe deer -- Dehio et al. 51 (4): 1557 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : ERIC-PCR, enterobacterial repetitive intergenic consensus PCR. The EMBL accession numbers for the 16S rRNA genes of Bartonella schoenbuchii NCTC 13165T (R1T), R3, R4 and R6 are AJ278187, AJ278188, AJ278189 and AJ278190, respectively. The EMBL accession numbers for the gltA genes of Bartonella schoenbuchii NCTC 13165T (R1T), R3, R4 and R6 are AJ278183, AJ278184, AJ278185 and AJ278186, respectively. 01706 # 2001 IUMS
AJ278187 AJ278188 AJ278189 AJ278190 AJ278183 AJ278184 AJ278185 AJ278186
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Enterococcus haemoperoxidus sp. nov. and Enterococcus moraviensis sp. nov., isolated from water -- Svec et al. 51 (4): 1567 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rRNA gene sequences of E. moraviensis CCM 4856T and E. haemoperoxidus CCM 4851T are AF286831 and AF286832, respectively. 01761 # 2001 IUMS
AF286831 AF286832
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Crossiella gen. nov., a new genus related to Streptoalloteichus -- Labeda 51 (4): 1575 -- International Journal of Systematic and Evolutionary Microbiology
X84447 X53199 X53200 X76957 X54274 X76958 X84321 X76954 X54288 X76959 Z14111 X76955 X55609 X80596 X76956 X53195 X76960 X54286 X53198 X76962 X53196 X53197 X53194 X76965 X76966 AF114797 AF114798 AF114799 AF114802 AF114800 AF114804 AF114808 AB006176 AF114813 AF114803 AF114805 AF114807 AF114809 AF114812 AF114814
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Phylogeny of six naviculoid diatoms based on 18S rDNA sequences -- Beszteri et al. 51 (4): 1581 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : ML, maximum-likelihood ; MPT, most parsimonious tree. The EMBL accession numbers for the 18S rDNA sequences determined in this study are : Amphora montana, AJ243061 ; Gomphonema parvulum, AJ243062 ; Eolimna minima, AJ243063 ; Eolimna subminuscula, AJ243064 ; Navicula veneta, AJ297724 ; and Phaeodactylum tricornutum, AJ269501. 01647 # 2001 IUMS
AJ243061 AJ243062 AJ243063 AJ243064 AJ297724 AJ269501
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Evolution of nuclear dualism in ciliates: a reanalysis in light of recent molecular data -- Katz 51 (4): 1587 -- International Journal of Systematic and Evolutionary Microbiology
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Partial sequence analysis of the actin gene and its potential for studying the phylogeny of Candida species and their teleomorphs -- Daniel et al. 51 (4): 1593 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : CI, consistency index ; Co-Q, coenzyme Q system or ubiquinone ; RI, retention index. The GenBank accession numbers for the nucleotide sequences reported in this paper are AJ389057AJ389092. 01584 # 2001 IUMS
AJ389057 AJ389058 AJ389059 AJ389060 AJ389061 AJ389062 AJ389063 AJ389064 AJ389065 AJ389066 AJ389067 AJ389068 AJ389069 AJ389070 AJ389071 AJ389072 AJ389073 AJ389074 AJ389075 AJ389076 AJ389077 AJ389078 AJ389079 AJ389080 AJ389081 AJ389082 AJ389083 AJ389084 AJ389085 AJ389086 AJ389087 AJ389088 AJ389089 AJ389090 AJ389091 AJ389092 AJ389057 AJ389092
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The EMBL accession numbers for the sequences determined in this study are AJ250961, AJ251006AJ251012, AJ251575 and AJ251576. 01768 # 2001 IUMS
AJ251006 AJ251007 AJ251008 AJ251009 AJ251010 AJ251011 AJ251012 AJ250961 AJ251006 AJ251012 AJ251575 AJ251576
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VALIDATION LIST NO. 82: Validation of publication of new names and new combinations previously effectively published outside the IJSEM -- 51 (5): 1619 -- International Journal of Systematic and Evolutionary Microbiology
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NOTIFICATION LIST: Notification that new names and new combinations have appeared in volume 51, part 4, of the IJSEM -- 51 (5): 1621 -- International Journal of Systematic and Evolutionary Microbiology
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Halomonas maura sp. nov., a novel moderately halophilic, exopolysaccharide-producing bacterium -- Bouchotroch et al. 51 (5): 1625 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DIG, digoxigenin ; EPS, exopolysaccharide ; PHA, poly-hydroxyalkanoate ; Tm, midpoint value of the thermal denaturation profile. The EMBL accession number for the 16S rDNA sequence of strain S-31T is AJ271864. 01591 # 2001 IUMS
AJ271864
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New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences -- Jian et al. 51 (5): 1633 -- International Journal of Systematic and Evolutionary Microbiology
Table 1. List of strains and GenBank accession numbers of partial HSP60 gene sequences of bifidobacteria and related bacterial strains Species Bifidobacterium adolescentis Bifidobacterium angulatum Bifidobacterium animalis Bifidobacterium asteroides Bifidobacterium bifidum Bifidobacterium boum Bifidobacterium breve Bifidobacterium catenulatum Bifidobacterium choerinum Bifidobacterium coryneforme Bifidobacterium cuniculi Bifidobacterium denticolens Bifidobacterium dentium Bifidobacterium gallicum Bifidobacterium gallinarum Bifidobacterium indicum Bifidobacterium infantis Bifidobacterium infantis Bifidobacterium infantis Bifidobacterium infantis Bifidobacterium inopinatum Bifidobacterium lactis Bifidobacterium lactis Bifidobacterium lactis Bifidobacterium longum Bifidobacterium magnum Bifidobacterium merycicum Bifidobacterium minimum Bifidobacterium pseudocatenulatum Bifidobacterium pseudolongum subsp. globosum Bifidobacterium pseudolongum subsp. pseudolongum Bifidobacterium pullorum Bifidobacterium ruminantium Bifidobacterium suis Bifidobacterium thermacidophilum Bifidobacterium thermophilum Gardnerella vaginalis Escherichia coli Strain JCM 1275T JCM 7096T JCM 1190T JCM 8230T JCM 1255T JCM 1211T JCM 1192T JCM 1194T JCM 1212T JCM 5819T JCM 1213T DSM 10105T JCM 1195T JCM 8224T JCM 6291T JCM 1302T JCM 1222T JCM 1210 Isolate BB52 Isolate 9901 DSM 10107T DSM 10140T Isolate 9950 Isolate 9952 JCM 1217T JCM 1218T JCM 8219T JCM 5821T JCM 1200T JCM 5820T JCM 1205T JCM 1214T JCM 8222T JCM 1269T AS 1.2282T JCM 1207T ATCC 14018T K-12 GenBank no. AF210319 AF240568 AY004273 AF240570 AY004280 AY004285 AF240566 AY004272 AY013247 AY004275 AY004283 AF240565 AF240572 AF240575 AY004279 AF240574 AF240577 AF240576 AY004288 AY004286 AY004281 AY004282 AY004287 AF286735 AF240578 AF240569 AY004277 AY004284 AY004274 AF286736 AF240573 AY004278 AF240571 AY013248 AY004276 AF240567 AF240579 AE000487*
AF210319 AF240568 AY004273 AF240570 AY004280 AY004285 AF240566 AY004272 AY013247 AY004275 AY004283 AF240565 AF240572 AF240575 AY004279 AF240574 AF240577 AF240576 AY004288 AY004286 AY004281 AY004282 AY004287 AF286735 AF240578 AF240569 AY004277 AY004284 AY004274 AF286736 AF240573 AY004278 AF240571 AY013248 AY004276 AF240567 AF240579 AE000487
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Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov -- Suzuki et al. 51 (5): 1639 -- International Journal of Systematic and Evolutionary Microbiology
L14637 X67608 D12666 M58768 D12665 M58770 D12668 D12674 M62797 M59051 M92279 M58783 M62794 M58782 M58784 D14023 D12667 M62795 M58791 M58793 M58777 M58775 M92278 M61002 U14586 U73726 M58775 U85885 U85884 L10947 D12667 D14023 M58770 D12665 M92279 M92278 U85881 U62914 U62913 D12674 U41349 D12668 X67608 X67610 U41349 L14637 M59051 M62797 M58777 M58791 M59052 M93152 M93153 M58776 M58784 M58782 M62795 M58793 M58783 M62794 M58768 M62791 M58770 D12668 M58870 AB032585 AB032589 AB032587 AB032588 AB032586 AB034212 AB034218 AB034211 AB032576 AB032577 AB034216 AB034217 AB034213 AB034214 AB034215 AB034223 AB034221 AB034224 AB034220 AB034225 AB034222 AB034234 AB034227 AB032584 AB032580 AB032583 AB032578 AB032581 AB032579 AB034233 AB034229 AB034228 AB034230 AB034231 AB034232 AB032582 AB034237 AB034236 AB034238 AB032590 AB034239 AB034219 AB034235 AB034226 AB034240 AB032501 AB032502 AB032503 AB032504 AB032505 AB032514 AB032509 AB032510 AB032511 AB032512 AB032513 AB032506 AB032507 AB032508 AF001369 AF001368 AF001370 AF001373 AF001372 AF001371 AJ005973
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Salana multivorans gen. nov., sp. nov., a novel actinobacterium isolated from an anaerobic bioreactor and capable of selenate reduction -- von Wintzingerode et al. 51 (5): 1653 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rDNA sequence of Salana multivorans Se-3111T is AJ400627. 01729 # 2001 IUMS
AJ400627
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Methanoculleus chikugoensis sp. nov., a novel methanogenic archaeon isolated from paddy field soil in Japan, and DNA--DNA hybridization among Methanoculleus species -- Dianou et al. 51 (5): 1663 -- International Journal of Systematic and Evolutionary Microbiology
' Present address : Laboratoire de Microbiologie Forestiere, DPF/INERA, 03 BP 7047 Ouagadougou, Burkina Faso. Present address : Institute of Genetic Ecology, Division of Environmental Information, Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan. § Present address : Soil Biology and Chemistry, Laboratory of Bioresource Functions, Department of Biological Mechanisms and Functions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan. The DDBJ accession number for the 16S rDNA sequence of strain MG62T is AB038795. 01676 # 2001 IUMS
AB038795
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Bacillus sonorensis sp. nov., a close relative of Bacillus licheniformis, isolated from soil in the Sonoran Desert, Arizona -- Palmisano et al. 51 (5): 1671 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the rpoB and 16S rRNA gene sequences reported in this paper are AF226065AF226075 and AF302118AF302125, respectively. 01589 # 2001 IUMS
AF226065 AF226066 AF226067 AF226068 AF226069 AF226070 AF226071 AF226072 AF226073 AF226074 AF226075 AF302118 AF302119 AF302120 AF302121 AF302122 AF302123 AF302124 AF302125 AF226065 AF226075 AF302118 AF302125
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Paenibacillus azoreducens sp. nov., a synthetic azo dye decolorizing bacterium from industrial wastewater -- Meehan et al. 51 (5): 1681 -- International Journal of Systematic and Evolutionary Microbiology
taxonomic problems continue (Heyndrickx et al., 1996). Molecular biological methods used to study microbial diversity have revealed that the genus Bacillus is a phylogenetically heterogeneous taxon with species varying greatly in DNA base composition (3269 mol % GjC) (Claus & Berkeley, 1986 ; Slepecky & Hemphill, 1991 ; Stackebrandt & Liesack, 1993). Subsequent phylogenetic studies using 16S rRNA gene sequencing revealed that the genus Bacillus could be separated into several distinct genera such as Alicyclobacillus (Wisotzkey et al., 1992), Aneurinibacillus (Shida et al., 1996), Brevibacillus (Shida et al., 1996), Halobacillus (Spring et al., 1996) and Paenibacillus (Ash et al., 1991). To date no Paenibacillus species have been implicated in azo dye decolorization. During investigation of a previously uncharacterized consortium described by Banat et al. (1997), we isolated a bacterium capable of azo dye decolorization, designated CM1T. Based on phylogenetic and phenotypic evidence, we propose that the isolate be classified as Paenibacillus azoreducens sp. nov. CM1T has been deposited in NCIMB and DSMZ with the accession numbers NCIMB 13761T and DSM 13822T, respectively. DSM 13822T was maintained at 4 mC on nutrient agar slopes containing 5 mg MnSO ;H O l-" to enhance %# sporulation. The isolate was routinely grown at 37 mC and 150 r.p.m. for 24 h in liquid broth containing (l-") : 5 g yeast extract ; 0n5 g (NH ) SO ; 2n66 g KH PO ; %# % #%
D85395 X60625 D85397 X60606 D88517 X60632 D85609 X60630 U49247 X60636 D78318 AJ272249 AJ271157 AJ011687 AJ272249
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Paenibacillus jamilae sp. nov., an exopolysaccharide-producing bacterium able to grow in olive-mill wastewater -- Aguilera et al. 51 (5): 1687 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : EPS, exopolysaccharide ; OMWW, olive-mill wastewater ; RBR, relative binding ratio. The GenBank/EMBL/DDBJ accession number for the 16S rDNA sequence of strain B.3T is J271157 01724 # 2001 IUMS
J27115
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Natrialba hulunbeirensis sp. nov. and Natrialba chahannaoensis sp. nov., novel haloalkaliphilic archaea from soda lakes in Inner Mongolia Autonomous Region, China -- Xu et al. 51 (5): 1693 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : PG, phosphatidylglycerol ; PGP-Me, phosphatidylglycerophosphate methyl ester ; S2-DGD-1, 2,6-HSO3-Manp-(1 2)-Glcp-(1 1)sn-glyceroldiether. The GenBank accession numbers for the 16S rDNA sequences of strains X21T and C112T are respectively AF262026 and AJ004806. 01718 # 2001 IUMS
AF262026 AJ004806
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Transfer of Pfennigia purpurea Tindall 1999 (Amoebobacter purpureus Eichler and Pfennig 1988) to the genus Lamprocystis as Lamprocystis purpurea comb. nov -- Imhoff 51 (5): 1699 -- International Journal of Systematic and Evolutionary Microbiology
Lamprocystis purpurea (pur.purhe.a. L. fem. adj. purpurea purple or purple-red). Cells are nearly spherical to oval, 1n92n3 µm wide and 2n03n2 µm long, non-motile and contain gas vesicles in central parts of cells. Cells single or in irregular aggregates of up to 40 cells. Colour of dense cell suspensions is purple-red. Photosynthetic pigments are bacteriochlorophyll a and the carotenoid okenone as a major component. Photolithoautotrophic growth under anoxic conditions in the light with sulfide, thiosulfate and elemental sulfur as electron donors. In the presence of sulfide and bicarbonate, acetate, propionate, pyruvate, lactate, glucose and formate are photoassimilated. Chemolithoautotrophic growth possible with sulfide and thiosulfate as electron donors under microoxic conditions in the dark. Assimilatory sulfate reduction is absent. Mesophilic freshwater bacterium with optimum growth at 2325 mC and pH 7n07n3. Habitat : anoxic, sulfide-containing water of stratified freshwater lakes, mud and stagnant water of ponds and lakes ; may occur as a dominant bloomforming bacterium together with Thiocapsa roseopersicina in wastewater lagoons containing degradable organic substances. The GjC content of the DNA is 63n563n6 (buoyant density). Type strain : DSM 4197T [l ThSch12T (Eichler and Pfennig) l BN 4450T (Imhoff)]. The EMBL accessInternational Journal of Systematic and Evolutionary Microbiology 51
Y12366 AJ223235
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Brevibacterium paucivorans sp. nov., from human clinical specimens -- Wauters et al. 51 (5): 1703 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rRNA gene sequence of strain CF62T is AJ251463. 01773 # 2001 IUMS
AJ251463
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Burkholderia sacchari sp. nov., a polyhydroxyalkanoate-accumulating bacterium isolated from soil of a sugar-cane plantation in Brazil -- Bramer et al. 51 (5): 1709 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : PHA, polyhydroxyalkanoates ; poly(3HB), poly(3hydroxybutyrate) ; poly(3HB-co-3HV), poly(3-hydroxybutyrate-co-3hydroxyvalerate). The GenBank accession number for the 16S rDNA sequence of strain IPT101T is AF263278. 01669 # 2001 IUMS
AF263278
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Mycobacterium frederiksbergense sp. nov., a novel polycyclic aromatic hydrocarbon-degrading Mycobacterium species -- Willumsen et al. 51 (5): 1715 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FAME, fatty acid methyl ester ; MACP, mycolic acid cleavage product ; MTT, 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide ; PAH, polycyclic aromatic hydrocarbon. The EMBL accession number of the 16S rDNA sequence of Mycobacterium frederiksbergense FAn9T is AJ276274. 01596 # 2001 IUMS
AJ276274
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Corynebacterium freneyi sp. nov., alpha-glucosidase-positive strains related to Corynebacterium xerosis -- Renaud et al. 51 (5): 1723 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers of the 16S rDNA sequences of strains ISPB 6695110T and ISPB 20395347 are AJ292762 and AJ292763. 01812 # 2001 IUMS
AJ292762 AJ292763
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Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient -- Chen et al. 51 (5): 1729 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : ARDRA, amplified rDNA restriction analysis. The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA sequences of strains LMG 19424T and LMG 19425 are AF300324 and AF300325, respectively. 01810 # 2001 IUMS
AF300324 AF300325
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Enterococcus porcinus sp. nov. and Enterococcus ratti sp. nov., associated with enteric disorders in animals -- Teixeira et al. 51 (5): 1737 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rDNA sequence of Enterococcus porcinus and the 16S RNA sequence of Enterococcus ratti are AF335596 and AF326472, respectively. 01618 # 2001 IUMS
AF335596 AF326472
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Globicatella sulfidifaciens sp. nov., isolated from purulent infections in domestic animals -- Vandamme et al. 51 (5): 1745 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA sequence of strain LMG 18844T is AJ297627. 01804 # 2001 IUMS
AJ297627
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Mycobacterium immunogenum sp. nov., a novel species related to Mycobacterium abscessus and associated with clinical disease, pseudo-outbreaks and contaminated metalworking fluids: an international cooperative study on mycobacterial taxonomy -- Wilson et al. 51 (5): 1751 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : BAL, bronchoalveolar lavage ; HP, hypersensitivity pneumonitis ; MWF, metalworking fluid ; PRA, PCRrestriction enzyme pattern analysis ; RGM, rapidly growing mycobacteria. The EMBL accession number for the 16S rDNA sequence of strain ATCC 700506 is AJ011771. 01577 # 2001 IUMS
AJ011771
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Description of two novel species of the genus Kitasatospora Omura et al. 1982, Kitasatospora cineracea sp. nov. and Kitasatospora niigatensis sp. nov -- Tajima et al. 51 (5): 1765 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DAP, diaminopimelic acid ; ISP, International Streptomyces Project. The DDBJ accession numbers for the 16S rDNA sequences of strains SK3255T, SK-3406T, SK-3412, SK-3421 and OM-5023 are respectively AB022875AB022879. 01763 # 2001 IUMS
AB022875 AB022876 AB022877 AB022878 AB022879 AB022875 AB022879
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Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend -- Goris et al. 51 (5): 1773 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession numbers for the 16S rRNA gene sequences of R. campinensis WS2T and R. basilensis ER121 and DSM 11853T are AF312020, AF312021 and AF312022, respectively. 01846 # 2001 IUMS
AF312020 AF312021 AF312022
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Nocardia beijingensis sp. nov., a novel isolate from soil -- Wang et al. 51 (5): 1783 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Biology, Hebei University, Boading, 071002, People's Republic of China. The GenBank accession number for the 16S rDNA sequence of strain 02T (l AS4.1521T) is AF154129. 01712 # 2001 IUMS
AF154129
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Caloranaerobacter azorensis gen. nov., sp. nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent -- Wery et al. 51 (5): 1789 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Centre for Extremophile Research, Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, UK. The EMBL accession number for the 16S rRNA gene sequence of strain MV1087T is AJ272422. 01719 # 2001 IUMS
AJ272422
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Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov -- Dewhirst et al. 51 (5): 1797 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : FAA, fastidious anaerobe agar ; PYG, peptone/yeast extract/glucose. The GenBank accession numbers for the 16S rDNA sequences determined in this study are AF287760 and AF292371AF292375. 01797 # 2001 IUMS
AF292371 AF292372 AF292373 AF292374 AF292375 AF287760 AF292371 AF292375
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Geobacter bremensis sp. nov. and Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria -- Straub and Buchholz-Cleven 51 (5): 1805 -- International Journal of Systematic and Evolutionary Microbiology
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A new genus of the order Actinomycetales, Virgosporangium gen. nov., with descriptions of Virgosporangium ochraceum sp. nov. and Virgosporangium aurantiacum sp. nov -- Tamura et al. 51 (5): 1809 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession numbers for the 16S rDNA sequences determined in this work are : AB006167 (Virgosporangium ochraceum YU655-43T), AB006162 (Virgosporangium ochraceum YU793-41), AB006161 (Virgosporangium ochraceum YU794-41) and AB006169 (Virgosporangium aurantiacum YU438-5T). 01539 # 2001 IUMS
AB006167 AB006162 AB006161 AB006169
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Borrelia sinica sp. nov., a Lyme disease-related Borrelia species isolated in China -- Masuzawa et al. 51 (5): 1817 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : Hsp, heat-shock protein ; Osp, outer surface protein. The DDBJ accession numbers for the 16S rDNA, flagellin gene and 5S23S rDNA intergenic spacer sequences reported in this paper are AB022101 and AB022124AB022146. 01322 # 2001 IUMS
AB022124 AB022125 AB022126 AB022127 AB022128 AB022129 AB022130 AB022131 AB022132 AB022133 AB022134 AB022135 AB022136 AB022137 AB022138 AB022139 AB022140 AB022141 AB022142 AB022143 AB022144 AB022145 AB022146 AB022101 AB022124 AB022146
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Natronobacterium nitratireducens sp. nov., a haloalkaliphilic archaeon isolated from a soda lake in China -- Xin et al. 51 (5): 1825 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : PG, phosphatidylglycerol ; PGP-Me, phosphatidylglycerophosphate methyl ester ; TMAO, trimethylamine N-oxide. The DDBJ accession number for the 16S rDNA sequence of strain C231T is AB045012. 01746 # 2001 IUMS
AB045012
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Xenophilus azovorans gen. nov., sp. nov., a soil bacterium that is able to degrade azo dyes of the Orange II type -- Blumel et al. 51 (5): 1831 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL accession number for the 16S rRNA gene sequence of strain KF46FT is AF285414. 01811 # 2001 IUMS
AF285414
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Form species Nostoc commune (Cyanobacteria) -- Wright et al. 51 (5): 1839 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : DEPC, diethyl pyrocarbonate ; PTB, phenacylthiazolium bromide. The GenBank accession numbers for the tRNALeu (UAA) group I intron sequences determined in this study are AF204090, AF204098 and AF204064AF204106. 01867 # 2001 IUMS
AF204064 AF204065 AF204066 AF204067 AF204068 AF204069 AF204070 AF204071 AF204072 AF204073 AF204074 AF204075 AF204076 AF204077 AF204078 AF204079 AF204080 AF204081 AF204082 AF204083 AF204084 AF204085 AF204086 AF204087 AF204088 AF204089 AF204090 AF204091 AF204092 AF204093 AF204094 AF204095 AF204096 AF204097 AF204098 AF204099 AF204100 AF204101 AF204102 AF204103 AF204104 AF204105 AF204106 AF204090 AF204098 AF204064 AF204106
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Hydrogenothermus marinus gen. nov., sp. nov., a novel thermophilic hydrogen-oxidizing bacterium, recognition of Calderobacterium hydrogenophilum as a member of the genus Hydrogenobacter and proposal of the reclassification of Hydrogenobacter acidophilus as Hydrogenobaculum acidophilum gen. nov., comb. nov., in the phylum 'Hydrogenobacter/Aquifex' -- Stohr et al. 51 (5): 1853 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Institut fur Meereskunde, Dusternbrooker Weg 20, 24105 Kiel, Germany. $ $ The GenBank accession number for the 16S rDNA sequence of strain VM1T is AJ292525. 01805 # 2001 IUMS
AJ292525
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Transfer of Rhodopseudomonas acidophila to the new genus Rhodoblastus as Rhodoblastus acidophilus gen. nov., comb. nov -- Imhoff 51 (5): 1863 -- International Journal of Systematic and Evolutionary Microbiology
completed by constriction. In the next cycle, both cells form buds at the poles of the former cell division. Under certain conditions, rosettes and clusters are formed. In media lacking calcium ions, cells are nonmotile. Internal photosynthetic membranes appear as lamellae underlying and parallel to the cytoplasmic membrane. Colour of anaerobic liquid cultures is purple-red to orange-brown. Cells grown under oxic conditions are colourless to light pink or orange. Absorption spectra of living cells show maxima at 375, 460, 490, 525, 590, 805, 855 and 890 nm. Photosynthetic pigments are bacteriochlorophyll a (esterified with phytol) and carotenoids of the spirilloxanthin series with glucosides of rhodopin and rhodopinal. The latter are characteristic of this species. Photoheterotrophic growth with a number of organic carbon sources is the preferred mode of growth. Photoautotrophic growth is possible with hydrogen as electron donor ; sulfide and thiosulfate cannot be used. Cells grow chemoautotrophically under microoxic to oxic conditions in the dark with hydrogen as electron donor. Organic carbon sources used are acetate, propionate, butyrate, lactate, pyruvate, fumarate, malate, succinate, valerate, formate, methanol and ethanol. Not used are caprylate, pelargonate, glycerol, benzoate, sugars, sugar alcohols, glutamate and other amino acids. Sulfate can be assimilated. Nitrogen sources are ammonia, dinitrogen and some amino acids. Growth factors are not required ; yeast extract and other complex nutrients do not increase the growth rate. Ubiquinones, menaquinones and rhodoquinones with 10 isoprene units (Q-10, MK-10, RQ-10) are present. Mesophilic freshwater bacterium with optimum growth at 2530 mC and pH 5n56n0. The GjC content of the DNA is 62n266n8 mol % (buoyant density). The type strain is ATCC 25092T (lDSM 137T lPfennig 7050T). The EMBL accession number of the 16S rDNA sequence of the type strain is M34128.
M34128
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Pigmentiphaga kullae gen. nov., sp. nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically -- Blumel et al. 51 (5): 1867 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rRNA gene sequence of strain K24T is AF282916. 01832 # 2001 IUMS
AF282916
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Methanofollis aquaemaris sp. nov., a methanogen isolated from an aquaculture fish pond -- Lai and Chen 51 (5): 1873 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain N2F9704T is AF262035. 01841 # 2001 IUMS
AF262035
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Helicobacter ganmani sp. nov., a urease-negative anaerobe isolated from the intestines of laboratory mice -- Robertson et al. 51 (5): 1881 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Clive and Vera Ramaciotti Centre for Gene Function Analysis, School of Biochemistry and Molecular Genetics, The University of New South Wales, Sydney, NSW 2052, Australia. Abbreviation : SPF, specific pathogen-free. The GenBank/EMBL /DDBJ accession numbers for the 16S rDNA sequences determined in this study are AF000221AF000224. 01668 # 2001 IUMS
AF000221 AF000222 AF000223 AF000224 AF000221 AF000224
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Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens -- Nemec et al. 51 (5): 1891 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : ARDRA, amplified rDNA restriction analysis. The EMBL accession numbers for the 16S rRNA gene sequences of strains LUH 3299, LUH 3792T, LUH 4763, LUH 4591, LUH 4760 and LUH 5832T are respectively AJ275037AJ275041 and AJ278311. 01914 # 2001 IUMS
AJ275037 AJ275038 AJ275039 AJ275040 AJ275041 AJ275037 AJ275041 AJ278311
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Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan -- Takahata et al. 51 (5): 1901 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Taisei Corporation Technology Center, 344-1 Nase-cho Totsuka-ku, Yokohama, Kanagawa 245-0051, Japan. The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA sequences of Thermotoga petrophila RKU-1T, Thermotoga naphthophila RKU-10T, Thermotoga neapolitana DSM 4359T and Thermotoga thermarum DSM 5069T are AB027016, AB027017, AB039768 and AB039769. The accession numbers for the gyrB gene sequences of T. petrophila RKU-1T, T. naphthophila RKU-10T, Thermotoga maritima DSM 3109T and T. neapolitana DSM 4359T are AB039770AB039773. 01704 # 2001 IUMS
AB039770 AB039771 AB039772 AB039773 AB027016 AB027017 AB039768 AB039769 AB039770 AB039773
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Desulforegula conservatrix gen. nov., sp. nov., a long-chain fatty acid-oxidizing, sulfate-reducing bacterium isolated from sediments of a freshwater lake -- Rees and Patel 51 (5): 1911 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : SRB, sulfate-reducing bacteria. The GenBank accession number for the 16S rRNA sequence of strain Mb1PaT is AF243334. 01899 # 2001 IUMS
AF243334
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The GenBank/EMBL/DDBJ accession numbers for the sequences determined in this study are Y15806Y15810 and Y15847Y15851 (18S rDNA), AJ276108AJ276117 (26S rDNA D1/D2) and AJ295239AJ295249 (COX2). 01736 # 2001 IUMS
Y15806 Y15807 Y15808 Y15809 Y15810 Y15847 Y15848 Y15849 Y15850 Y15851 AJ276108 AJ276109 AJ276110 AJ276111 AJ276112 AJ276113 AJ276114 AJ276115 AJ276116 AJ276117 AJ295239 AJ295240 AJ295241 AJ295242 AJ295243 AJ295244 AJ295245 AJ295246 AJ295247 AJ295248 AJ295249 Y15806 Y15810 Y15847 Y15851 AJ276108 AJ276117 AJ295239 AJ295249
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The GenBank accession numbers for the 26S rDNA sequence of strains SG99-34T and SG99-25 are AF296438 and AF257272, respectively. 01799 # 2001 IUMS
AF296438 AF257272
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Corrigenda to the Validation Lists -- Euzeby and Kudo 51 (5): 1933 -- International Journal of Systematic and Evolutionary Microbiology
Haloferax volcanii is a new combination, not a new species. The correct citation of this name is Haloferax volcanii (Mullakhanbhai and Larsen 1975) Torreblanca et al. 1986 comb. nov. [basonym : Halobacterium volcanii Mullakhanbhai and Larsen 1975 (Approved Lists 1980)]. The title of the journal has been omitted in the reference citation of Pilimelia columellifera (ex Schafer $ 1973) Vobis et al. 1986, Pilimelia columellifera subsp. columellifera (ex Schafer 1973) Vobis et al. 1986, and $ Pilimelia columellifera subsp. pallida (ex Schafer 1973) $ Vobis et al. 1986 subsp. nov., nom. rev. The complete reference is as follows : Vobis, G., Schafer, D., Kothe, $ H. W. & Brenner, B. (1986). Descriptions of Pilimelia columellifera (ex Schafer 1973) nom. rev. and Pilimelia $ columellifera subsp. pallida (ex Schafer 1973) nom. rev. $ Syst Appl Microbiol 8, 6774. The KCC accession numbers for the type strains of Streptomyces brasiliensis (Falcao de Morais et al. 1966) 4 Goodfellow et al. 1986, Streptomyces carpinensis (Falcao de Morais et al. 1971) Goodfellow et al. 1986, 4 Streptomyces cinereus (Cross et al. 1963) Goodfellow et al. 1986, Streptomyces flaveus (Cross et al. 1963) Goodfellow et al. 1986, Streptomyces flaviscleroticus (ex Pridham 1970) Goodfellow et al. 1986, Streptomyces fumigatiscleroticus (ex Pridham 1970) Goodfellow et al. 1986, Streptomyces humiferus Goodfellow et al. 1986, Streptomyces niger (Thirumalachar 1955) Goodfellow et al. 1986, Streptomyces paradoxus Goodfellow et al. 1986, Streptomyces pseudoechinosporeus Goodfellow et al. 1986, Streptomyces purpureus (Matsumae and Hata 1968) Goodfellow et al. 1986, Streptomyces ruber (Thirumalachar 1955) Goodfellow et al. 1986, Streptomyces spiralis (Falcao de Morais 4 1970) Goodfellow et al. 1986 and Streptomyces yerevanensis Goodfellow et al. 1986 should be KCC A-0086 (not KCC 3086), KCC A-0301 (not KCC 3301), KCC A-0040 (not KCC 3040), KCC A-0035 (not KCC 3035), KCC A-0100 (not KCC 3100), KCC A-0101 (not KCC 3101), KCC A-0044 (not KCC 3044), KCC A-0158 (not KCC 3158), KCC A-0052 (not KCC 3052), KCC A-0066 (not KCC 3066), KCC A-0172 (not KCC 3172), KCC A-0131 (not KCC 3131), KCC A-0302 (not KCC 3302) and KCC A-0047 (not KCC 3047), respectively.
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Nomenclature of the subgenera Moraxella and Branhamella and of the nine species included in these subgenera and proposal to modify Rule 34a of the Bacteriological Code (1990 Revision). Request for an Opinion -- Euzeby 51 (5): 1939 -- International Journal of Systematic and Evolutionary Microbiology
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International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Gram-negative anaerobic rods: Minutes of the meetings, 9 and 10 July 2000, Manchester, UK -- Olsen and Shah 51 (5): 1943 -- International Journal of Systematic and Evolutionary Microbiology
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VALIDATION LIST NO. 83: Validation of publication of new names and new combinations previously effectively published outside the IJSEM -- 51 (6): 1945 -- International Journal of Systematic and Evolutionary Microbiology
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NOTIFICATION LIST: Notification that new names and new combinations have appeared in volume 51, part 5, of the IJSEM -- 51 (6): 1947 -- International Journal of Systematic and Evolutionary Microbiology
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Legionella gresilensis sp. nov. and Legionella beliardensis sp. nov., isolated from water in France -- Lo Presti et al. 51 (6): 1949 -- International Journal of Systematic and Evolutionary Microbiology
Deceased 11 February 2001. Present address : Sanofi-Synthelabo Recherche, Centre de Chilly! Mazarin, Genomique Cardiovasculaire/ Thrombose, 1 av. Pierre Brossolette, 91385 Chilly-Mazarin cedex, France. Abbreviations : DFA, direct immunofluorescence assay ; LLAPs, Legionellalike amoebal pathogens ; RAPD, randomly amplified polymorphic DNA ; SAT, slide agglutination test. The GenBank accession numbers for the 16S rDNA sequences of strains ! ! Greoux 11 D13T, Montbeliard A1T, ATCC 33737T and ATCC 51914T are AF122883AF122886, respectively. 01664 # 2001 IUMS
AF122883 AF122884 AF122885 AF122886 AF122883 AF122886
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Fusobacterium equinum sp. nov., from the oral cavity of horses -- Dorsch et al. 51 (6): 1959 -- International Journal of Systematic and Evolutionary Microbiology
Deceased 9 June 2001. Present address : Defence Science & Technology Organisation, Aeronautical & Maritime Research Laboratories, Combatant Protection & Nutrition Branch, PO Box 4331, Melbourne, VIC 3001, Australia. The EMBL accession number for the 16S rRNA gene sequence of strain VPB 4027T is AJ295750. 01789 # 2001 IUMS
AJ295750
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Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil -- Chin et al. 51 (6): 1965 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Department of Microbiology and Immunology, University of Melbourne, Victoria 3010, Australia. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain PB90-1T is AJ229235. 01702 # 2001 IUMS
AJ229235
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Microbacterium gubbeenense sp. nov., from the surface of a smear-ripened cheese -- Brennan et al. 51 (6): 1969 -- International Journal of Systematic and Evolutionary Microbiology
(=NCIMB 30129(T)). The GenBank accession number for the 16S rDNA sequence
Phenotypic and phylogenetic studies were performed on 11 strains of a Microbacterium-like organism isolated from the surface of a smear-ripened cheese. The isolates were Gram-positive, catalase-positive, facultatively anaerobic, oxidase-negative, non-spore-forming, non-motile, small, slender rods and grew in 12 % (w/v) NaCl. Chemotaxonomic investigation revealed that all the isolates belonged unambiguously to the genus Microbacterium. They contained type B1 peptidoglycans with L-lysine as the diamino acid and glycolyl acyl types ; rhamnose and galactose were the cell wall sugars. The GMC content ranged from 69 to 72 mol %. The major menaquinones were MK-11 and MK-12 and the major fatty acids were anteiso C15 :0 and C17 :0 and iso C16 :0. Phylogenetic analysis of the 16S rRNA sequences of four isolates showed that they represented a new subline in the genus Microbacterium, with Microbacterium barkeri as their nearest phylogenetic neighbour. M. barkeri showed the highest sequence similarity to the isolates ; however, DNADNA hybridization showed that the isolates had only 38 % chromosomal similarity to M. barkeri. Based on the phylogenetic and phenotypic distinctiveness of the isolates, it is proposed that they be classified as a new Microbacterium species, for which the name Microbacterium gubbeenense sp. nov. is suggested. The type strain has been deposited as LMG S-19263T ( l NCIMB 30129T). The GenBank accession number for the 16S rDNA sequence of the type strain is AF263563.
AF263563
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Lachnobacterium bovis gen. nov., sp. nov., a novel bacterium isolated from the rumen and faeces of cattle -- Whitford et al. 51 (6): 1977 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : BLIS, bacteriocin-like inhibitory substance ; LRC, culture collection of the Lethbridge Research Centre. The GenBank accession numbers for the 16S rDNA sequence of strains YZ 140, YZ 87T, YZ 39 and YZ 63 are AF298662, AF298663, AF298664 and AF298665, respectively. 01855 # Minister of Public Works and Government Services Canada 2001
AF298662 AF298663 AF298664 AF298665
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Phylogenetic relationships of three bacterial strains isolated from the pasture legume Biserrula pelecinus L -- Nandasena et al. 51 (6): 1983 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : HOMOPIPES, homopiperazine-N,Nh-bis-2-(ethanesulfonic acid) ; YMA, yeast/mannitol agar ; YMB, yeast/mannitol broth. The GenBank accession numbers for the 16S rRNA gene sequences of strains WSM 1284, WSM 1283 and WSM 1497 are AF178962, AF178963 and AF178964. 01809 # 2001 IUMS
AF178962 AF178963 AF178964
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Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov -- Ivanova et al. 51 (6): 1987 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of Arenibacter latericius KMM 426T is AF052740. 01558 # 2001 IUMS
AF052740
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Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment -- Bruns et al. 51 (6): 1997 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain B1T is AF218782. 01620 # 2001 IUMS
AF218782
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Mycobacterium doricum sp. nov -- Tortoli et al. 51 (6): 2007 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain FI13295T is AF264700. 01723 # 2001 IUMS
AF264700
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Pseudomonas sp. strain KC represents a new genomovar within Pseudomonas stutzeri -- Sepulveda-Torres et al. 51 (6): 2013 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Universidad Metropolitana, Department of Science and Technology, PO Box 21150, San Juan, Puerto Rico 00928-1150. Present address : Environmental Science Center, Syracuse Research Corporation, North Syracuse, NY 13212, USA. § Present address : Department of Biochemistry, Duke University, Durham, NC 27708, USA. Abbreviations : ITS1, 16S23S internal transcribed spacer region ; PDTC, pyridine-2,6-bis(thiocarboxylate). The GenBank accession numbers for the 16S rRNA gene and ITS1 sequences of strain KC are AF067960 and AF063219 (16S rRNA) and AF356514 (ITS1). 01779 # 2001 IUMS
AF067960 AF063219 AF356514
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Detailed phylogeny of ammonia-oxidizing bacteria determined by rDNA sequences and DNA homology values -- Aakra et al. 51 (6): 2021 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : AOB, chemolithoautotrophic ammonia-oxidizing bacteria ; ISR, 16S23S rDNA intergenic spacer region. The GenBank/EMBL/DDBJ accession numbers for the 16S rDNA and ISR sequences determined in this study are AJ298724, AJ298725, AJ298728 AJ298730, AJ298732AJ298739, AJ298741AJ298747 (16S rDNA) and AJ298749AJ298774 (ISR). 01794 # 2001 IUMS
AJ298732 AJ298733 AJ298734 AJ298735 AJ298736 AJ298737 AJ298738 AJ298739 AJ298741 AJ298742 AJ298743 AJ298744 AJ298745 AJ298746 AJ298747 AJ298749 AJ298750 AJ298751 AJ298752 AJ298753 AJ298754 AJ298755 AJ298756 AJ298757 AJ298758 AJ298759 AJ298760 AJ298761 AJ298762 AJ298763 AJ298764 AJ298765 AJ298766 AJ298767 AJ298768 AJ298769 AJ298770 AJ298771 AJ298772 AJ298773 AJ298774 AJ298724 AJ298725 AJ298728 AJ298730 AJ298732 AJ298739 AJ298741 AJ298747 AJ298749 AJ298774
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Vibrio agarivorans sp. nov., a novel agarolytic marine bacterium -- Macian et al. 51 (6): 2031 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA sequences of Vibrio agarivorans CECT 5085T and CECT 5084 are AJ310647 and AJ310648, respectively. The accession numbers for the respective 23S rRNA sequences are AJ310649 and AJ310650. 01813 # 2001 IUMS
AJ310647 AJ310648 AJ310649 AJ310650
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Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia -- Gaunt et al. 51 (6): 2037 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Parasite Molecular Biology and Biochemistry Unit, Department of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK. Present address : CEH Oxford, Mansfield Road, Oxford OX1 3SR, UK. ! ' § Present address : Unite d 'Ecologie et Physiologie du Systeme Digestif, INRA Centre de Recherche de Jouy-en-Josas, 78352 Jouy-en-Josas Cedex, France. R Present address : Molecular Medicine Centre, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK. The atpD and recA sequences and details of the SimPlot analyses are available as supplementary material in IJSEM Online (http :// ijs.sgmjournals.org/ ). Abbreviations : HKY85, HasegawaKishinoYano model ; K2P, Kimura's two-parameter model ; SSU, small subunit rRNA. The EMBL accession numbers for the sequences reported in this study are AJ294386AJ294409 (atpD) and AJ294363AJ294385 (recA). 01784 # 2001 IUMS
AJ294386 AJ294387 AJ294388 AJ294389 AJ294390 AJ294391 AJ294392 AJ294393 AJ294394 AJ294395 AJ294396 AJ294397 AJ294398 AJ294399 AJ294400 AJ294401 AJ294402 AJ294403 AJ294404 AJ294405 AJ294406 AJ294407 AJ294408 AJ294409 AJ294363 AJ294364 AJ294365 AJ294366 AJ294367 AJ294368 AJ294369 AJ294370 AJ294371 AJ294372 AJ294373 AJ294374 AJ294375 AJ294376 AJ294377 AJ294378 AJ294379 AJ294380 AJ294381 AJ294382 AJ294383 AJ294384 AJ294385 AJ294386 AJ294409 AJ294363 AJ294385
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Isolation of a cinnamic acid-metabolizing Clostridium glycolicum strain from oil mill wastewaters and emendation of the species description -- Chamkha et al. 51 (6): 2049 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : OMW, olive mill wastewater. The GenBank accession number for the 16S rRNA gene sequence of strain CIN5 is AY007244. 01818 # 2001 IUMS
AY007244
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Desulfomusa hansenii gen. nov., sp. nov., a novel marine propionate-degrading, sulfate-reducing bacterium isolated from Zostera marina roots -- Finster et al. 51 (6): 2055 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Environmental Engineering Laboratory, Aalborg University, Sohngaardsholmsvej 57, DK-9000 Aalborg, Denmark. Abbreviations : DSR, dissimilatory sulfite reductase ; SSU, small subunit. The GenBank accession numbers of the 16S rDNA sequence and the dissimilatory sulfite reductase gene sequence of strain P1T are AF321820 and AF321819, respectively. 01877 # 2001 IUMS
AF321820 AF321819
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Reclassification of Saccharococcus caldoxylosilyticus as Geobacillus caldoxylosilyticus (Ahmad et al. 2000) comb. nov -- Fortina et al. 51 (6): 2063 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : ARDRA, amplified rDNA restriction analysis ; RAPD, randomly amplified polymorphic DNA ; RSA, ribosomal spacer analysis. The EMBL accession numbers for the 16S rDNA sequences of strains TS24A (l DSM 12833) and TS2A are AJ271738 and AJ271739. 01550 # 2001 IUMS
AJ271738 AJ271739
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Agreia bicolorata gen. nov., sp. nov., to accommodate actinobacteria isolated from narrow reed grass infected by the nematode Heteroanguina graminophila -- Evtushenko et al. 51 (6): 2073 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : DAB, 2,4-diaminobutyric acid. The GenBank accession number for the 16S rRNA sequence of strain VKM Ac-1804T is AF159363. 01728 # 2001 IUMS
AF159363
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Lactobacillus coleohominis sp. nov., isolated from human sources -- Nikolaitchouk et al. 51 (6): 2081 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank/EMBL /DDBJ accession number for the 16S rRNA gene sequence of strain CCUG 44007T is AJ292530. 01900 # 2001 IUMS
AJ292530
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Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Ruger 1983 as Marinibacillus marinus gen. nov., comb. nov -- Yoon et al. 51 (6): 2087 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank accession number for the 16S rDNA sequence of strain YKJ-13T is AF281158. 01860 # 2001 IUMS
AF281158
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Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov -- Keis et al. 51 (6): 2095 -- International Journal of Systematic and Evolutionary Microbiology
characteristics for these two species. As a consequence, emended descriptions for these two species are provided. It is also recommended that the name ` C. saccharoperbutylacetonicum ' sp. nov. be accepted for the third species of solvent-producing clostridia, with ATCC 27021T as the type strain (as this name is in widespread use in the scientific literature). The name Clostridium saccharobutylicum sp. nov. is proposed for the fourth species. Since NCP 262T is the most extensively characterized strain belonging to this new species, this strain has been designated as the type strain. Cultures of NCP 262T have been lodged with the American Type Culture Collection (ATCC) and the Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ) under accession numbers ATCC BAA-117T and DSM 13864T, respectively. The solvent-producing clostridial strains used in this study are shown in Table 1. These included the 55 strains investigated in a previous study (Keis et al., 1995), as well as an additional 40 strains consisting of 14 C. beijerinckii strains held in international culture collections, two strains currently designated as
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Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum -- Chamkha et al. 51 (6): 2105 -- International Journal of Systematic and Evolutionary Microbiology
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Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group -- Felis et al. 51 (6): 2113 -- International Journal of Systematic and Evolutionary Microbiology
The EMBL/GenBank/DDBJ accession numbers for the partial recA sequences of strains LMG 9191T, LMG 17315T, LMG 6400T, ATCC 393T, ATCC 334, LMG 9438, NCDO 151T and DF1 are AJ286115AJ286117, AJ286121AJ286124 and AJ297821, respectively. 01906 # 2001 IUMS
AJ286115 AJ286116 AJ286117 AJ286121 AJ286122 AJ286123 AJ286124 AJ286115 AJ286117 AJ286121 AJ286124 AJ297821
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Phylogenetic analysis of the genus Actinoplanes and transfer of Actinoplanes minutisporangius Ruan et al. 1986 and 'Actinoplanes aurantiacus' to Cryptosporangium minutisporangium comb. nov. and Cryptosporangium aurantiacum sp. nov -- Tamura and Hatano 51 (6): 2119 -- International Journal of Systematic and Evolutionary Microbiology
The DDBJ/GenBank/EMBL accession numbers for the 16S rRNA gene sequences determined in this study are shown in Figs 1 and 2. 01835 # 2001 IUMS
M27245 M27245 AB006164
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Nocardia ignorata sp. nov -- Yassin et al. 51 (6): 2127 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : MQCL, Microbiological Quality Control Laboratory. The GenBank accession number for the 16S rDNA sequence of strain IMMIB R-1434T (l DSM 44496T l NRRL B-24141T) is AJ303008. 01902 # 2001 IUMS
AJ303008
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Alcalilimnicola halodurans gen. nov., sp. nov., an alkaliphilic, moderately halophilic and extremely halotolerant bacterium, isolated from sediments of soda-depositing Lake Natron, East Africa Rift Valley -- Yakimov et al. 51 (6): 2133 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : APG, acyl phosphatidylglycerol ; CID, collision-induced dissociation ; CL, cardiolipin ; FAB, fast atom bombardment ; GPA, glycerophosphatic acid ; PC, phosphatidylcholine ; PE, phosphatidylethylamine ; PG, phosphatidylglycerol ; PLFA, phospholipid ester-linked fatty acid. The EMBL accession numbers for the 16S rRNA gene sequences of Alcalilimnicola halodurans 34AlcT and isolates Ph-C1 and Ph-C2 are AJ404972, AJ278688 and AJ278687, respectively. 01795 # 2001 IUMS
AJ404972 AJ278688 AJ278687
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Reorganization of genera in the families Rickettsiaceae and Anaplasmataceae in the order Rickettsiales: unification of some species of Ehrlichia with Anaplasma, Cowdria with Ehrlichia and Ehrlichia with Neorickettsia, descriptions of six new species combinations and designation of Ehrlichia equi and 'HGE agent' as subjective synonyms of Ehrlichia phagocytophila -- Dumler et al. 51 (6): 2145 -- International Journal of Systematic and Evolutionary Microbiology
Switzerland and Sweden in Europe ; serological evidence of human infection in the absence of overt human disease has been described in the USA, UK, Switzerland, Norway, Sweden, Denmark, Germany and Bulgaria. Human disease is characterized by fever, headache, myalgia and malaise and by the presence of leukopaenia, thrombocytopaenia and evidence of hepatic injury (Bakken et al., 1996 ; Aguero-Rosenfeld et al., 1996). The case fatality rate in humans is less than 1 %, but is associated with severe opportunistic infections (Walker & Dumler, 1997). Although A. phagocytophila has a broad geographical distribution and all isolates appear to have significant serological crossreactivity, a minor degree of variation in the nucleotide sequence of up to 5 bp ( 99n5 % identity) in the 16S rRNA gene and 99n0 % identity in groESL is detected. The organism shares significant antigens with E. canis, E. chaffeensis and E. (Cowdria) ruminantium comb. nov. The major constitutively produced protein antigens are encoded by a multigene family, vary between 42 and 49 kDa in molecular size and are expressed on the outer membrane (Murphy et al., 1998 ; Dumler et al., 1995 ; Asanovich et al., 1997 ; Zhi et al., 1997, 1998). The amino acid sequences of the major outer-membrane proteins are similar to those of A. marginale, E. (Cowdria) ruminantium, E. canis, E. chaffeensis and Wolbachia species. The genome size is approximately 1500 kbp (Rydkina et al., 1999). The GjC content of the DNA estimated from sequenced genes is 41 mol %. The 16S rRNA gene sequence of the A. phagocytophila type strain WebsterT is the same as deposited in GenBank under the accession number U02521.
U02521
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Abbreviation : LSU rDNA, large-subunit rRNA coding gene. The GenBank accession number for the 26S rDNA D1/D2 domain sequence of Y94T is AF283568. 01870 # 2001 IUMS
AF283568
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The GenBank accession number for the 26S rRNA sequence of strain CBS 8813T is AF294910. The GenBank accession numbers for the 18S rRNA sequences of strains CBS 8813T and CBS 6736T are AF294911 and AF294751, respectively. 01808 # 2001 IUMS
AF294910 AF294911 AF294751
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Phylogenetic analysis of strains originally assigned to Bullera variabilis: descriptions of Bullera pseudohuiaensis sp. nov., Bullera komagatae sp. nov. and Bullera pseudoschimicola sp. nov -- Bai et al. 51 (6): 2177 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviation : ITS, internal transcribed spacer. The GenBank accession numbers for the ITS region and 18S rDNA sequences of the strains determined in the present study are AF314965AF314989 and AF314990AF314999, respectively. 01852 # 2001 IUMS
AF314965 AF314966 AF314967 AF314968 AF314969 AF314970 AF314971 AF314972 AF314973 AF314974 AF314975 AF314976 AF314977 AF314978 AF314979 AF314980 AF314981 AF314982 AF314983 AF314984 AF314985 AF314986 AF314987 AF314988 AF314989 AF314990 AF314991 AF314992 AF314993 AF314994 AF314995 AF314996 AF314997 AF314998 AF314999 AF314965 AF314989 AF314990 AF314999
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Three new species of Saccharomyces sensu lato van der Walt from Yaku Island in Japan: Saccharomyces naganishii sp. nov., Saccharomyces humaticus sp. nov. and Saccharomyces yakushimaensis sp. nov -- Mikata et al. 51 (6): 2189 -- International Journal of Systematic and Evolutionary Microbiology
The GenBank /EMBL /DDBJ accession numbers sequences are AB016512 (IFO 10181T), AB016513 (IFO 10673T) and AB016514 (IFO 1889T) for the 18S rDNA sequences and AB040999 (IFO 10673T) and AB041000 (IFO 1889T) for the 26S rDNA domain D1/D2 sequences. 01853 # 2001 IUMS
AB016512 AB016513 AB016514 AB040999 AB041000
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Reclassification of the Cryptococcus humicola complex -- Takashima et al. 51 (6): 2199 -- International Journal of Systematic and Evolutionary Microbiology
Present address : Yothi Research Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, 73/1 Rama VI Road, Bangkok 10400, Thailand. Abbreviation : ITS, internal transcribed spacer. The GenBank/EMBL/DDBJ accession numbers for the sequences determined in this study are AB051045AB051048. 01878 # 2001 IUMS
AB051045 AB051046 AB051047 AB051048 AB051045 AB051048
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New insights into the phylogenetic position of diplonemids: G+C content bias, differences of evolutionary rate and a new environmental sequence -- Moreira et al. 51 (6): 2211 -- International Journal of Systematic and Evolutionary Microbiology
Abbreviations : BP, bootstrap proportion ; COI, cytochrome-c oxidase subunit I ; LBA, long branch attraction ; ML, maximum-likelihood ; MP, maximum-parsimony ; NJ, neighbour-joining ; SSU, small-subunit. The GenBank accession number for the SSU rRNA sequence of the diplonemid clone DH148-EKB1 is AF290080. 01863 # 2001 IUMS
AF290080
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Is characterization of a single isolate sufficient for valid publication of a new genus or species? Proposal to modify Recommendation 30b of the Bacteriological Code (1990 Revision) -- Christensen et al. 51 (6): 2221 -- International Journal of Systematic and Evolutionary Microbiology
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International Committee on Systematics of Prokaryotes. Subcommittee on the taxonomy of mollicutes - Minutes of the interim meetings, 13 and 19 July 2000, Fukuoka, Japan -- Bradbury 51 (6): 2227 -- International Journal of Systematic and Evolutionary Microbiology
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