Extraction of tags using combinations of primers
file : sorted by numbers
Extraction, 1 hidden mismatch allowed
| # |
nbr amplicons |
F |
R |
left |
rigth |
length |
| 1 |
16418 |
CAGCMGCCGCGGTAATWC |
GTGCTCCCCCGCCAATTCCT |
423 |
866 |
442 |
| 2 |
15592 |
CCRGGCCCTAYGGGG |
GWATTACCGCGGCKGCTG |
501 |
760 |
258 |
| 3 |
15453 |
ACGGGGYGCAGCAGGCGCGA |
GWATTACCGCGGCKGCTG |
437 |
655 |
217 |
| 4 |
14971 |
CCCTACGGGGCGCAGCAG |
GWATTACCGCGGCKGCTG |
506 |
756 |
249 |
| 5 |
13651 |
CCRGGCCCTAYGGGG |
GTGCTCCCCCGCCAATTCCT |
301 |
893 |
591 |
| 6 |
13203 |
CCCTACGGGGCGCAGCAG |
GTGCTCCCCCGCCAATTCCT |
305 |
892 |
586 |
| 7 |
11577 |
ACGGGGYGCAGCAGGCGCGA |
GTGCTCCCCCGCCAATTCCT |
299 |
889 |
590 |
| 8 |
10980 |
AGGAATTGGCGGGGGAGCAC |
GGCCATGCACCWCCTCTC |
780 |
926 |
145 |
| 9 |
10322 |
GAAATCYTGTAATCC |
GTGCTCCCCCGCCAATTCCT |
541 |
784 |
243 |
| 10 |
10225 |
GAGAGGWGGTGCATGGCC |
TTMGGGGCATRCIKACCT |
887 |
1077 |
190 |
| 11 |
9677 |
AGGAATTGGCGGGGGAGCAC |
TTMGGGGCATRCIKACCT |
772 |
1107 |
334 |
| 12 |
7440 |
CAGCMGCCGCGGTAATWC |
GGATTACARGATTTC |
871 |
1283 |
412 |
| 13 |
7439 |
CAGCMGCCGCGGTAATWC |
TTMGGGGCATRCIKACCT |
444 |
1255 |
811 |
| 14 |
7187 |
TCYGKTTGATCCYGSCRGA |
CCCCRTAGGGCCYGG |
5 |
372 |
366 |
| 15 |
6929 |
ACGGGGYGCAGCAGGCGCGA |
GGATTACARGATTTC |
577 |
1267 |
690 |
| 16 |
6683 |
CCRGGCCCTAYGGGG |
GGATTACARGATTTC |
550 |
1216 |
666 |
| 17 |
6553 |
CCCTACGGGGCGCAGCAG |
GGATTACARGATTTC |
589 |
1279 |
689 |
| 18 |
6482 |
CCCTACGGGGCGCAGCAG |
GGCCATGCACCWCCTCTC |
337 |
1135 |
797 |
| 19 |
6236 |
ACGGGGYGCAGCAGGCGCGA |
GGCCATGCACCWCCTCTC |
318 |
1096 |
778 |
| 20 |
6040 |
CCRGGCCCTAYGGGG |
TTMGGGGCATRCIKACCT |
321 |
1282 |
961 |
| 21 |
5766 |
CCCTACGGGGCGCAGCAG |
TTMGGGGCATRCIKACCT |
334 |
1313 |
978 |
| 22 |
5589 |
TCYGKTTGATCCYGSCRGA |
GWATTACCGCGGCKGCTG |
6 |
746 |
739 |
| 23 |
5518 |
GAAATCYTGTAATCC |
TTMGGGGCATRCIKACCT |
520 |
1068 |
548 |
| 24 |
5446 |
ACGGGGYGCAGCAGGCGCGA |
TTMGGGGCATRCIKACCT |
318 |
1284 |
966 |
| 25 |
5236 |
GAGAGGWGGTGCATGGCC |
GACGGGCGGTGTGTRCAA |
848 |
1225 |
376 |
| 26 |
4807 |
AGGAATTGGCGGGGGAGCAC |
GACGGGCGGTGTGTRCAA |
766 |
1273 |
506 |
| 27 |
4720 |
TCYGKTTGATCCYGSCRGA |
GTGCTCCCCCGCCAATTCCT |
2 |
914 |
911 |
| 28 |
4222 |
CAGCMGCCGCGGTAATWC |
GACGGGCGGTGTGTRCAA |
438 |
1370 |
932 |
| 29 |
4104 |
TCYGKTTGATCCYGSCRGA |
TCGCGCCTGCTGCRCCCCGT |
7 |
529 |
522 |
| 30 |
4018 |
TTCCGGTTGATCCYGCCRGA |
CCCCRTAGGGCCYGG |
2 |
367 |
364 |
| 31 |
3829 |
CCRGGCCCTAYGGGG |
GACGGGCGGTGTGTRCAA |
302 |
1381 |
1078 |
| 32 |
3743 |
CCCTACGGGGCGCAGCAG |
GACGGGCGGTGTGTRCAA |
308 |
1382 |
1074 |
| 33 |
3489 |
TCYGKTTGATCCYGSCRGA |
CTGCTGCGCCCCGTAGGG |
10 |
726 |
716 |
| 34 |
3410 |
ACGGGGYGCAGCAGGCGCGA |
GACGGGCGGTGTGTRCAA |
309 |
1379 |
1069 |
| 35 |
3201 |
TTCCGGTTGATCCYGCCRGA |
GTGCTCCCCCGCCAATTCCT |
2 |
915 |
913 |
| 36 |
2918 |
TTCCGGTTGATCCYGCCRGA |
GWATTACCGCGGCKGCTG |
4 |
808 |
804 |
| 37 |
2846 |
GAAATCYTGTAATCC |
GACGGGCGGTGTGTRCAA |
600 |
1339 |
738 |
| 38 |
2691 |
CGGAGATGGAACCTGAGACA |
GWXTTACCGCGGCKGCTG |
304 |
527 |
223 |
| 39 |
2504 |
TTCCGGTTGATCCYGCCRGA |
TCGCGCCTGCTGCRCCCCGT |
2 |
475 |
472 |
| 40 |
2430 |
TTCCGGTTGATCCYGCCRGA |
CTGCTGCGCCCCGTAGGG |
4 |
594 |
589 |
| 41 |
2018 |
TCYGKTTGATCCYGSCRGA |
GGCCATGCACCWCCTCTC |
4 |
1186 |
1181 |
| 42 |
1762 |
TCYGKTTGATCCYGSCRGA |
TTMGGGGCATRCIKACCT |
3 |
1336 |
1333 |
| 43 |
1716 |
CGGAGATGGAACCTGAGACA |
GGATTACARXATTTC |
429 |
1092 |
663 |
| 44 |
1617 |
CGGAGATGGAACCTGAGACA |
GTGCTCCCCCGCCAATTCCT |
246 |
839 |
593 |
| 45 |
1581 |
TCYGKTTGATCCYGSCRGA |
GGATTACARGATTTC |
9 |
1542 |
1532 |
| 46 |
1294 |
TCYGKTTGATCCYGSCRGA |
GACGGGCGGTGTGTRCAA |
2 |
1439 |
1436 |
| 47 |
965 |
TTCCGGTTGATCCYGCCRGA |
TTMGGGGCATRCIKACCT |
3 |
1262 |
1259 |
| 48 |
949 |
TTCCGGTTGATCCYGCCRGA |
GGCCATGCACCWCCTCTC |
4 |
1182 |
1178 |
| 49 |
877 |
TTCCGGTTGATCCYGCCRGA |
GGATTACARGATTTC |
6 |
1905 |
1898 |
| 50 |
806 |
CGGAGATGGAACCTGAGACA |
TTMGGGGCATRCIKACCT |
228 |
1104 |
875 |
| 51 |
755 |
TTCCGGTTGATCCYGCCRGA |
GACGGGCGGTGTGTRCAA |
2 |
1429 |
1427 |
| 52 |
356 |
TCYGKTTGATCCYGSCRGA |
TGTCTCAGXTTCCATCTCCG |
22 |
640 |
618 |
| 53 |
308 |
TTCCGGTTGATCCYGCCRGA |
TGTCTCAGXTTCCATCTCCG |
1 |
434 |
432 |
| 54 |
283 |
CGGAGATGGAACCTGAGACA |
GACGGGCGGTGTGTRCAA |
252 |
1346 |
1093 |
| 55 |
18 |
AGGAATTGGCGGGGGAGCAC |
GTGCTCCCCCGCCAATTCCT |
816 |
911 |
94 |
| 56 |
9 |
AGGAATTGGCGGGGGAGCAC |
CCCCRTAGGGCCYGG |
1015 |
1844 |
829 |
| 57 |
8 |
GAGAGGWGGTGCATGGCC |
CCCCRTAGGGCCYGG |
1599 |
2248 |
649 |
| 58 |
7 |
CCCTACGGGGCGCAGCAG |
CCCCRXAGGGCCYGG |
429 |
1587 |
1158 |
| 59 |
7 |
ACGGGGYGCAGCAGGCGCGA |
CCCCRXAGGGCCYGG |
436 |
1587 |
1151 |
| 60 |
6 |
AGGAATTGGCGGGGGAGCAC |
GWXTTACCGCGGCKGCTG |
293 |
1137 |
843 |
| 61 |
5 |
TTCCGGTTGATCCYGCCRGA |
TCYGSCRGGATCAAMCRGA |
163 |
205 |
41 |
| 62 |
4 |
GAGAGGWGGTGCATGGCC |
GWXTTACCGCGGCKGCTG |
544 |
1450 |
906 |
| 63 |
3 |
AGGAATTGGCGGGGGAGCAC |
GGATTACARGATTTC |
445 |
1648 |
1203 |
| 64 |
2 |
CCCCRTAGGXCCYGG |
GACGGGCGGTGTGTRCAA |
105 |
1284 |
1179 |
| 65 |
2 |
ACGGGGYGCAGCAGGCGCGA |
CTGCTGCGCCCCXTAGGG |
71 |
752 |
681 |
| 66 |
1 |
GGATTACARGATTTC |
GGATTACXRGATTTC |
330 |
2121 |
1791 |
| 67 |
1 |
AGGAATTGGXGGGGGAGCAC |
TGTCTCAGGTTCCATCTCCG |
98 |
162 |
64 |